%% add BIAC tools if needed
%run /usr/local/packages/MATLAB/BIAC/startup.m

%% add path to pupilOmetry function
%addpath /home/petty/net/munin/data/Programs/User_Scripts/petty/matlab/
%addpath \\Munin\Data\Programs\User_Scripts\petty\matlab\

%%input XML ( merged behavioral + ROI )
xmlName = '/home/petty/eyetracking/autreg/11436_run04_roiHits.xml';

%%preprocessed eyetracking output
ET_filename = '/home/petty/net/hill/data/Dichter/AutReg.01/Data/Eyetracking/subj1234_run1_pre.wks';

%%the attribute to match images with from the inputXML
imgAttr = 'imgName';

%%output name of the XML with added pupilOmetry data. will be everything from input + pupilchange
outName = '/home/petty/eyetracking/autreg/11436_cigal_pupil2.xml';

%%show the denoising plots
plot = 0; %1 to show, 0 to skip

%%run the actual function
pupilOmetry(xmlName,ET_filename,imgAttr,outName,plot);