====== BIAC Cluster Sample Scripts ======
All of the following scripts can be found on the head node under:
/usr/local/sge_templates/

If you are modifying any of the scripts, check for syntax errors before submitting a job.

  > sh -n script.sh





===== BXH Tools =====
  * [[biac:cluster:examples:bxh2analyze|bxh2analyze]] - Create Analyze or NIFTI files from BXH files
  * [[biac:cluster:examples:qa|qa]] - Run fmri QA analyses on the cluster

===== FSL =====
  * [[biac:cluster:examples:bet|BET]] - Brain Extraction Tool
  * [[biac:cluster:examples:featlevel1|FEAT Level 1]]
  * [[biac:cluster:examples:featlevel2|FEAT Level 2]]
  * [[biac:cluster:examples:fdr|FDR]] - Calculate the false discovery rate (FDR) on 3rd Level/group FSL analysis  


===== Freesurfer =====
  * [[biac:cluster:examples:runFREE|freesurfer]] - Freesurfer Segmentation