====== Installed Packages ======
OS: Scientific Linux release 7.4 (Nitrogen) : updated 08/21/18 

  * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**
  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: **v6.0.3**, v6.0.0, v5.0.10, v5.0.9, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions )
  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v7.1.1**, v6.0.1, v6.0.0, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)
  * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]
  * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]] 
  * [[http://www.csie.ntu.edu.tw/~cjlin/libsvm/|libsvm]]: v2.9
  * [[http://www.csie.ntu.edu.tw/~cjlin/liblinear/|liblinear]]: v1.51
  * [[http://afni.nimh.nih.gov/afni/|afni]]: openmp_64 ( AFNI_17.0.01 )
  * [[http://dicom.offis.de/dcmtk.php.en|Dicom Toolkit]]: v3.6.1
  * [[http://www-sop.inria.fr/asclepios/software/MedINRIA/|MedINRIA]]: v2.2.3
  * [[http://www.picsl.upenn.edu/ANTS/|ANTS]]: **v2.3.1**, v2.2.0
  * [[http://www.slicer.org/slicerWiki/index.php/Slicer4|Slicer4]]: v4.6.4
  * [[http://www.nitrc.org/projects/dtiprep/|DTIPrep]]: v1.2.4
  * [[http://trackvis.org/dtk/|DTK]]: v0.6.4.1
  * [[http://trackvis.org/|TrackVis]]: v0.6.1
  * [[http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php|Camino]]
  * [[http://www.nitrc.org/projects/camino-trackvis/|camino-trackvis]]
  * [[http://www.cmtk.org/|Connectome Mapping Toolkit]]: v1.2.0
  * [[http://www.cabiatl.com/mricro/mricron/main.html|MRICron]]
  * [[http://www.cs.waikato.ac.nz/ml/weka/|Weka]]: v3.8.1
  * [[http://dsi-studio.labsolver.org/|DSI Studio]]
  * [[http://www.mrtrix.org/|MRTrix3]]: v3.0_RC2
  * [[http://www.itksnap.org/pmwiki/pmwiki.php|ITK-SNAP]]: v3.2.0
  * [[http://www.r-project.org/|R]]: v3.4.4
  * [[http://idealab.ucdavis.edu/software/utilities.php|idealab utilities]]
  * [[https://www.humanconnectome.org/software/connectome-workbench|Connectome Workbench]]
  * [[http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Documentation|C3D]]
  * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]
  * [[http://simnibs.de/|simnibs]]
  * MATLAB :  **R2019b**, R2018a, R2017a, R2014a
  * Python : 2.7, 3.6
  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 3.6.3
  * [[ https://github.com/Washington-University/HCPpipelines | HCP Pipelines ]]: 3.4.0

^ Matlab 2017a        ^ SPM8 Toolboxes ^
| BIAC Tools          | ArtRepair      |
| spm8                | DARTEL         |
| NIFTI Libraries     | Diffusion TB   |
| fslroi              | Marsbar        |
| libsvm-3.0          | vbm8           |
| WFU_PickAtlas_3.0.1 | Volumes TB     |
| Art                 | LST            |
| Spider              | DRIFTER        |
| GIFT                | CONN           |
| Pls                 |                |



^ python3.6 ^ python2.7 ^ 
|apipkg==1.5|amico==1.0|
|atomicwrites==1.1.5|apptools==4.4.0|
|attrs==18.1.0|argh==0.26.2|
|backcall==0.1.0|asn1crypto==0.22.0|
|certifi==2018.8.13|backports-abc==0.5|
|chardet==3.0.4|backports.functools-lru-cache==1.5|
|citeproc-py==0.4.0|backports.shutil-get-terminal-size==1.0.0|
|click==6.7|backports.ssl-match-hostname==3.4.0.2|
|cloudpickle==0.5.3|backports.weakref==1.0.post1|
|configparser==3.5.0|bleach==1.5.0|
|cycler==0.10.0|bxh==0.9|
|dask==0.18.2|certifi==2017.4.17|
|decorator==4.3.0|cffi==1.10.0|
|dipy==0.14.0|cfflib==2.0.5|
|duecredit==0.6.4|chardet==2.2.1|
|execnet==1.5.0|click==6.7|
|fmriprep==1.1.4|configobj==4.7.2|
|funcsigs==1.0.2|configparser==3.5.0|
|future==0.16.0|Connectome-Mapper==1.2.0|
|grabbit==0.2.2|cryptography==1.9|
|h5py==2.8.0|cycler==0.10.0|
|idna==2.7|decorator==3.4.0|
|indexed-gzip==0.8.7|dipy==0.11.0|
|ipython==6.5.0|docutils==0.13.1|
|ipython-genutils==0.2.0|empy==3.3.2|
|isodate==0.6.0|entrypoints==0.2.3|
|jedi==0.12.1|enum34==1.1.6|
|Jinja2==2.10|ez-setup==0.9|
|kiwisolver==1.0.1|funcsigs==1.0.2|
|lockfile==0.12.2|functools32==3.2.3.post2|
|lxml==4.2.4|future==0.16.0|
|MarkupSafe==1.0|futures==3.2.0|
|matplotlib==2.2.3|grabbit==0.1.1|
|mock==2.0.0|html5lib==0.9999999|
|more-itertools==4.3.0|idna==2.5|
|mpmath==1.0.0|indexed-gzip==0.8.6|
|mriqc==0.13.1|iniparse==0.4|
|networkx==2.1|ipaddress==1.0.18|
|nibabel==2.3.0|IPy==0.75|
|nilearn==0.4.2|ipykernel==4.6.1|
|nipy==0.4.2|ipython==5.4.1|
|nipype==1.1.2|ipython-genutils==0.2.0|
|nitime==0.7|ipywidgets==6.0.0|
|niworkflows==0.4.2|isodate==0.5.4|
|num2words==0.5.7|javapackages==1.0.0|
|numpy==1.15.0|Jinja2==2.9.6|
|packaging==17.1|jsonschema==2.6.0|
|pandas==0.23.4|jupyter==1.0.0|
|parso==0.3.1|jupyter-client==5.0.1|
|patsy==0.5.0|jupyter-console==5.1.0|
|pbr==4.2.0|jupyter-core==4.3.0|
|pexpect==4.6.0|Keras==2.1.2|
|pickleshare==0.7.4|kitchen==1.1.1|
|Pillow==5.2.0|kiwisolver==1.0.1|
|pluggy==0.7.1|Lasagne==0.1|
|prompt-toolkit==1.0.15|line-profiler==2.1.2|
|prov==1.5.0|lockfile==0.12.2|
|ptyprocess==0.6.0|lxml==3.2.1|
|py==1.5.4|Markdown==2.6.10|
|pybids==0.6.4|MarkupSafe==1.0|
|pydot==1.2.4|matplotlib==2.2.2|
|pydotplus==2.0.2|mistune==0.7.4|
|Pygments==2.2.0|mock==2.0.0|
|pyparsing==2.2.0|mpmath==0.19|
|pytest==3.7.1|nbconvert==5.2.1|
|pytest-forked==0.2|nbformat==4.3.0|
|pytest-xdist==1.22.5|netifaces==0.10.4|
|python-dateutil==2.7.3|networkx==1.11|
|pytz==2018.5|nibabel==2.3.0|
|PyWavelets==0.5.2|nilearn==0.3.0|
|PyYAML==3.13|nipy==0.4.1|
|rdflib==4.2.2|nipype==1.1.0|
|requests==2.19.1|nitime==0.7|
|scikit-image==0.14.0|niworkflows==0.4.2|
|scikit-learn==0.19.2|nose==1.3.7|
|scipy==1.3.0|notebook==5.0.0|
|seaborn==0.9.0|num2words==0.5.6|
|simplegeneric==0.8.1|numpy==1.14.5|
|simplejson==3.16.0|olefile==0.44|
|six==1.11.0|packaging==16.8|
|sklearn==0.0|pandas==0.20.2|
|statsmodels==0.9.0|pandocfilters==1.4.1|
|svgutils==0.3.0|paramiko==2.1.2|
|sympy==1.2|pathlib2==2.2.1|
|toolz==0.9.0|pathtools==0.1.2|
|traitlets==4.3.2|patsy==0.4.1|
|traits==4.6.0|pbr==3.1.1|
|urllib3==1.23|perf==0.1|
|versioneer==0.18|pexpect==4.2.1|
|wcwidth==0.1.7|pickleshare==0.7.4|
|xvfbwrapper==0.2.9|Pillow==4.1.1|
|virtualenv==16.0.0 |policycoreutils-default-encoding==0.1|
| |prompt-toolkit==1.0.14|
| |protobuf==3.5.1|
| |prov==1.5.0|
| |psycopg2==2.7.1|
| |ptyprocess==0.5.1|
| |py==1.4.34|
| |pyasn1==0.2.3|
| |pybids==0.5.1|
| |pycparser==2.17|
| |pycrypto==2.6.1|
| |pycurl==7.19.0|
| |pydeface==1.0|
| |pydicom==0.9.9|
| |pydot==1.2.3|
| |pydotplus==2.0.2|
| |pyface==5.1.0|
| |PyFFTW3==0.2.1|
| |Pygments==2.2.0|
| |pygobject==3.22.0|
| |pygpgme==0.3|
| |pyliblzma==0.5.3|
| |pymer4==0.0.1|
| |pymvpa2==2.6.1|
| |pyparsing==2.2.0|
| |pytest==3.1.2|
| |python-daemon==2.1.2|
| |python-dateutil==2.6.0|
| |python-linux-procfs==0.4.9|
| |pytz==2017.2|
| |pyudev==0.15|
| |PyWavelets==0.5.2|
| |pyxattr==0.5.1|
| |PyYAML==3.12|
| |pyzmq==16.0.2|
| |qtconsole==4.3.0|
| |rdflib==4.2.2|
| |rpy2==2.8.6|
| |scandir==1.5|
| |schedutils==0.4|
| |scikit-image==0.13.0|
| |scikit-learn==0.19.1|
| |scikit-neuralnetwork==0.7|
| |scikits.statsmodels==0.3.1|
| |scipy==1.3.0|
| |seaborn==0.7.1|
| |seobject==0.1|
| |sepolicy==1.1|
| |simplegeneric==0.8.1|
| |simplejson==3.10.0|
| |singledispatch==3.4.0.3|
| |six==1.11.0|
| |sklearn==0.0|
| |slip==0.4.0|
| |slip.dbus==0.4.0|
| |spams==2.6|
| |SSSDConfig==1.15.2|
| |statsmodels==0.8.0|
| |subprocess32==3.2.7|
| |svgutils==0.3.0|
| |sympy==1.0|
| |tensorflow==1.4.1|
| |tensorflow-tensorboard==0.4.0rc3|
| |terminado==0.6|
| |testpath==0.3.1|
| |Theano==0.9.0|
| |tinycss==0.4|
| |tornado==4.5.1|
| |traitlets==4.3.2|
| |traits==4.6.0|
| |traitsui==5.1.0|
| |urlgrabber==3.10|
| |versioneer==0.18|
| |virtualenv==15.1.0|
| |watchdog==0.8.3|
| |wcwidth==0.1.7|
| |webencodings==0.5.1|
| |Werkzeug==0.14.1|
| |widgetsnbextension==2.0.0|
| |wxPython==2.8.12.0|
| |wxPython-common==2.8.12.0|
| |xmltodict==0.11.0|
| |xvfbwrapper==0.2.9|
| |yum-metadata-parser==1.1.4|