For tasks using concurrent processes, average times are reported. Individual process times are included in the Notes section for the task.
Task | biacnode1 [860] | biacnode2 [1950] |
---|---|---|
FSL Batch Job 1 | 2h 36m | 2h 36m |
FSL Batch Job 2 | 46m | 48m |
FSL Batch Job 3 | 1h 20m | 1h 23m |
FSL Batch Job 4 | 36m | 38m |
Freesurfer Job 1 | 14h 52m (892m) | 15h 40m (940m) |
Freesurfer Job 2 | 19h 45m (1185m) | 22h 4m (1324m) |
Matlab Job 1 | 39m | 42m |
Matlab Job 2 | 48m | 54m |
Dummy Task 1 | x-d x-h x-m | x-d x-h x-m |
A brief description of this task including information about software and datasets (size, runs …) used.
a dataset from MIRECC with 10 runs (180 timepoints each), 23 copes … job includes slice-time correction, motion correction, coregistration and stats within FSL, using a bash script that i (chris) wrote (calls FEAT and uses SED for some replacements).
the completed dataset from “batch job 1”, was used for a second level FSL analysis … 10 runs were combined for a within subject average (for all 23 copes).
a dataset from MIRECC with 5 runs (180 timepoints each), 23 copes … job includes slice-time correction, motion correction, coregistration and stats within FSL, using a bash script that i (chris) wrote (calls FEAT and uses SED for some replacements).
the completed dataset from “batch job 3”, was used for a second level FSL analysis … 5 runs were combined for a within subject average (for all 23 copes).
Running a modified version of Jim's “runfreesurfer” on a 256x256x166 (1mm^3) T1 dataset. BIAC Scan ID 31816, series600. This script will run “recon-all” with all options “autorecon1”, “autorecon2” and “autorecon3”.
Running the modified version of “runfreesurfer” described above on two datasets:
For biacnode1, I am running Freesurfer on both of these datasets in parallel. For biacnode2, I made one copy of each dataset, and am running Freesurfer on all 4 datasets (31812, 31885, 31812 copy, and 31885 copy) in parallel.
Time for biacnode1:
Time for biacnode2 (I incorrectly used the command “time” for this one, so I had to get the processing time from the Freesurfer log files):
SENSE spiral recon on exam 32904, run #7 (spiral-in, 64×64, 30 slices, 168 time points)
same as Matlab Job 1