To display FreeSurfer subject data with fScan, you should have your SUBJECTS_DIR environment variable set in your current command shell. If you ran the commands above, you presumably have defined SUBJECTS_DIR in your “~/.tcshrc” file, so if you are running “tcsh” you should be all set. If you are running the default “bash” command shell, you can either switch to tcsh simply by entering the “tcsh command, as:
tcsh
export SUBJECTS_DIR=/data/users/yourname/freesurfer/subjects
fscan2 %%
fscan2 subject.wdf%subjname -D
“Subjname” is the name you gave that subject. The '%' tells fScan to lookup “subjname” in the SUBJECTS_DIR heirarchy. The ”-D“ means display images. If you are connected to Golgi via a Windows SSH client (e.g. F-Secure) make sure you also have XWin-32 running on your Windows computer in order to see fScan's X display.
Note that you should be using the “fscan2” version of fScan on Golgi. For now, “fscan” still refers to version 1, which is almost obsolete and will not recognize the ”.WDF“ file format.
FScan should display a menu of data sets. Click on any data set name to display it. A Taskbar menu will appear with the data to help you navigate. (More detailed instructions will follow.)