fScan Reference Manual, Chapter 2 (CmdLineOptions): design

Designmatrix -- Create and manipulate task design matrix

usage: -designmatrix [NAME designname] [flag]

	-design [flg] [[NAME] dmname] [TR trsecs] [LENGTH ntrs] [DT dtsecs] [NZ nz] varb1 [flg1] varb2 [flg2] ... 
			; load REF varbs (varb1...) into design data variable
		FLG: 0 - default
			 1 - convolve with HRF
			 2 - add derivative varb
			 4 - different slices can have different values (otherwise there is only one value per TR)
	-design [flg] [[NAME] dmname] [TR trsecs] [DT dtsecs] filename.mat 
			; read FILENAME.MAT design matrix file into design data
			; (current active design variable is the default if NAME not specified)
	-design [flg] [[NAME] dmname] [LABEL varb1name varb2name ...] 
			; adjust design data parameters
			
	-design [flg] [[NAME] dmname] filename.con
			; read FILENAME.CON design contrast file into design data
			; (current active design variable is the default if NAME not specified)

	-design imagedata [[NAME] dmname] 
			; link design variable NAME to the named image data set
	-design dmname
			; make the internal design data variable DMNAME the current active design data
			; Note: The current active design pointer is set in all DESIGN cmds.
	-design [name] contrast col1 [-] col2 [label] [col3 [-] col4 [label]] ...
			; create contrast matrix specifying pairs of columns in the design matrix
	
	-design [name] add
			; 
	-design [name] select
			; 
	-design name delete
			; 
	See also:  -output DESIGN [flag] [name] filename
					FLAG: XML vs FSL format
					
			   -output REF    [flag] [name] filename
	

See Also:
fScan Home, fScan Manual, CmdLineOptions, Manual Help