Differences

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--- biac:analysis:physiological [2011/11/22 14:26]
gadde
+++ biac:analysis:physiological [2013/04/02 19:40]
petty [FSL Feat]
@@ Line 85: / Line 85: @@
 Opt.Nslices = 34
 Opt.PhysFS = 100
+Opt.SliceOrder = 'alt+z'
+%please choose the correct order if not running interleaved: **'alt+z'**/'alt-z'/'seq+z'/'seq-z'
 RetroTS(Opt)
@@ Line 111: / Line 113: @@
-===== FSL Feat =====
-We've gotten the FSL beta functions for physiological correction, which we'll test.
-They are based on the same algorithms used in afni with retroicor.  Once things are functioning, they'll be installed on the cluster.
-More information can be seen here:
-[[http://www.fmrib.ox.ac.uk/Members/jon/physiological-noise-correction]]
-The beta options will allow you to plug in the resulting regressors directly into Feat.  After pre-processing you can use the **res4d.nii.gz** files for further analysis ( filtered_func_data would not have the physio regressor removed ).

Brain Imaging & Analysis Center