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--- biac:analysis:topup_correction [2019/02/22 14:03] – cmp12
+++ biac:analysis:topup_correction [2019/02/22 14:51] – cmp12
@@ Line 192: / Line 192: @@
 there are 2 scenarios that typically apply here
-) a short acquisition with RPE B0s
+) DWI and a short acquisition with RPE B0s
-) an entire acquisition with the same gradient table and reverse phase encoding
+) 2 entire acquisitions with the same gradient table and reverse phase encoding
 In both scenarios it is important to create your data with normal phase encoding direction first, followed by reversed.
@@ Line 200: / Line 200: @@
 ==== Prepare your input datasets ====
+Specify that a set of images (typically b=0 volumes) will be provided for use in inhomogeneity field estimation only
 For scenario 1, create your blip up / blip down B0 data the same way as above.
@@ Line 287: / Line 289: @@
 dwipreproc dwi.mif dwi_corr.mif -rpe_all -pe_dir AP -readout_time 0.10656 -debug
--rpe_all signals that you've replicated ALL the directions with a rpe acquisition
+-rpe_all signals that you've replicated A
+LL the directions with a rpe acquisition
 -pe_dir is the phase encode direction of your regular acquisition
 -readout_time from above
 </code>
+{{ :biac:analysis:trace_raw_corr.png?800 |}}