Brain Imaging & Analysis Center

• BIAC accounts: http://wiki.biac.duke.edu/biac:accounts
• password reset: http://wiki.biac.duke.edu/biac:password
• starting your project: http://www.biac.duke.edu/research/gettingstarted.asp

• Cluster wiki: http://wiki.biac.duke.edu/biac:cluster
• Hugin for dummies

…or really smart people that just have never worked in this type of system

                 
                 The BIAC cluster, Hugin, is a Linux base processor put in place to analyze any type of data.  You will work on Hugin though a terminal window by writing commands one
                 line at a time.  In order to set up access to Hugin on your computer, you need to be behind the firewall.  Being at BIAC or on "Diamonds" or "Clubs" puts you
                 behind this firewall.
                           
                           First, you will need X-Win.  On BIAC computers, X-Win comes standard but it can also be downloaded through OIT’s website 
                           here http://oit.duke.edu/comp-print/software/index.php (select “Browse and order software”).
                           
                           You will also need a cluster account. Please send an email to help@biac.duke.edu requesting a cluster account.
                           Include your BIAC Windows username in the email (see http://wiki.biac.duke.edu/biac:accounts).
                 
                 

On an interactive node Cd findexp

Command lines ls ls -ltr mkdir cd .. Tab to complete Gedit . nedit

Commenting out
saving

& bash rm Up arrow cp qdel qstatall Blue “directories” are equivalent to folders, “cd”ing is like double clicking Getting files from munin onto hugin, and mounting experiments? Findexp Print from terminal window

• Remote desktopping: http://wiki.biac.duke.edu/biac:remotessh

• Submitting jobs: http://wiki.biac.duke.edu/biac:cluster:submit#job_submission
• Packages installed on the cluster: http://wiki.biac.duke.edu/biac:cluster:packages
• Requesting more memory: see “job restrictions” http://wiki.biac.duke.edu/biac:cluster:interactive
• Show Series: http://wiki.biac.duke.edu/biac:matlab:showsrs2
• Trouble shooting flow chart
• Useful tools prezi