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biac:bxh_eventstats [2014/08/04 16:03] (current)
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 +====== bxh_eventstats ======
 +
 +The output of bxh_eventstats (PREFIX_ is the output prefix specified when running bxh_eventstats):​
 +
 +  * PREFIX_LOG.txt ​ --  a log of all the external commands the program runs as well as some other data
 +  * PREFIX_LOG_EPOCHAVG.txt ​ --  a log from bxh_epochavg,​ which does most of the work
 +  * PREFIX_QUERIES.txt ​ --  a list of all the queries specified
 +  * PREFIX_baselineAvg.* ​ --  an average of all the points used as baselines for every trial
 +  * PREFIX_brainmask.* ​ --  if the "​brainmask"​ option is specified, this is the mask
 +
 +For each query with a label QUERYLABEL:
 +
 +  * PREFIX_QUERYLABEL_avg.* ​ --  the raw averages of the time-locked epochs for each event that matched this query.
 +  * PREFIX_QUERYLABEL_avg_percent.* ​ --  same as above, but as a percentage of the mean image.
 +  * PREFIX_QUERYLABEL_n.* ​ --  the number of trials included (per voxel)
 +  * PREFIX_QUERYLABEL_std.* ​ --  stanard deviation of the time-locked epochs for each event that matched this query.
 +  * PREFIX_QUERYLABEL_std_percent.* ​ --  same as above, but as a percentage of the mean image.
 +  * PREFIX_QUERYLABEL_zerotmap.* ​ --  4-D result of a t-test of the _avg image against a zero time course.
 +  * PREFIX_QUERYLABEL_cor.* ​ --  if a response template is specified using the "​template"​ option, then this is the 3-D image representing the correlation between the time courses in the _avg image and the response template
 +  * PREFIX_QUERYLABEL_tmap.* ​ --  the t-statistic corresponding to the above _cor image.
 +
 +For each comparison specified using the "​tcompare QUERY1-QUERY2"​ option:
 +
 +  * PREFIX_QUERY1_vs_QUERY2_tmap.* ​ --  the t-statistic representing the significance of the difference between the epochs matching QUERY1 and the epochs matching QUERY2.
 +
 +When running bxh_eventstats_combine,​ its output will include:
 +
 +  * PREFIX_QUERYLABEL_avg.* -- as above, though now these represent the mean of all the relevant _avg.* files.
 +  * PREFIX_QUERYLABEL_avg_percent.* -- as above, though now these represent the mean of all the relevant _avg_percent.* files.
 +  * PREFIX_QUERYLABEL_tmap_zerottest.* and PREFIX_QUERY1_vs_QUERY2_tmap_zerottest.*: ​ this represents a t-test of the relevant tmaps against zero.
 +  * PREFIX_QUERYLABEL_pmap_weightedz.* and PREFIX_QUERY1_vs_QUERY2_pmap_weightedz.*: ​ this represents a weighted-z comparison of the relevant tmaps (see Whitlock, "​Combining probability from independent tests: the weighted Z-method is superior to Fisher'​s approach",​ http://​www.ncbi.nlm.nih.gov/​pubmed/​16135132 )
  
biac/bxh_eventstats.txt · Last modified: 2014/08/04 16:03 (external edit)