User Tools

Site Tools


biac:cluster:architecture

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
biac:cluster:architecture [2022/06/01 19:07]
127.0.0.1 external edit
biac:cluster:architecture [2022/06/06 17:44] (current)
cmp12
Line 5: Line 5:
 The illustration below gives a good overview of how BIAC software interacts with SGE during job submission: The illustration below gives a good overview of how BIAC software interacts with SGE during job submission:
  
-{{ :biac:cluster:admin:cluster.png | Cluster Flowchart }}+{{ :biac:cluster:cluster.png | Cluster Flowchart }}
  
  - User logs in to the head node via ssh\\  - User logs in to the head node via ssh\\
Line 12: Line 12:
  - User submits a job through qsub -v EXPERIMENT=Usertest.01\\  - User submits a job through qsub -v EXPERIMENT=Usertest.01\\
  - findexp returns an experiment path .. it can be saved to the $EXPERIMENT variable if following is present in the submission script:  - findexp returns an experiment path .. it can be saved to the $EXPERIMENT variable if following is present in the submission script:
-   <code>EXPERIMENT=`findexp $EXPERIMENT`</code>+   EXPERIMENT=`findexp $EXPERIMENT`
  - any access to experiment paths returned through findexp are picked up by the BIAC Proxy mounter.  access is provided based on user's experiment priviledges  - any access to experiment paths returned through findexp are picked up by the BIAC Proxy mounter.  access is provided based on user's experiment priviledges
biac/cluster/architecture.1654110439.txt.gz · Last modified: 2022/06/01 19:07 by 127.0.0.1