Differences

This shows you the differences between two versions of the page.

--- biac:cluster:modules [2023/03/15 15:54]
cmp12 [Setting Up Experiment Specific Conda Environments]
+++ biac:cluster:modules [2023/04/06 18:35]
cmp12
@@ Line 211: / Line 211: @@
 Add something else to your environment ( like R ):
 <code>
-(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ conda install r
+(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ conda search r-base
+#if you don't see the version you want you can add additional channels
+conda config --add channels conda-forge
+conda config --set channel_priority strict
+#then search again
+conda search r-base
+#install the version you would like to use
+(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ conda install r-base=4.2.2
 (/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ which R
@@ Line 217: / Line 228: @@
 (/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ R --version
-R version 3.6.1 (2019-07-05) -- "Action of the Toes"
+R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
-Copyright (C) 2019 The R Foundation for Statistical Computing
+Copyright (C) 2022 The R Foundation for Statistical Computing
-Platform: x86_64-conda_cos6-linux-gnu (64-bit)
+Platform: x86_64-conda-linux-gnu (64-bit)
 </code>
+====== Other Software ======
+Matlab Libraries : /usr/local/packages/MATLAB
+Premade Singularity Images : /usr/local/packages/singularity/images/

Brain Imaging & Analysis Center