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biac:cluster:packages [2015/01/07 18:59]
cmp12 		biac:cluster:packages [2023/02/23 18:43]
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-====== Installed Packages ====== 
-OS: Scientific Linux 6.4 
  
-  * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.0**, v1.10.9, v1.10.8, v1.10.7 
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.5, **v5.0.1** ( default ) , v4.1.9, v4.1.8, v4.1.6, v4.1.5, v4.1.4, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v5.3.0 ( default )**, v5.1.0, v5.0.0, v4.5.0 (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version) 
-  * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]] 
-  * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]  
-  * [[http://www.csie.ntu.edu.tw/~cjlin/libsvm/|libsvm]]: v2.9 
-  * [[http://www.csie.ntu.edu.tw/~cjlin/liblinear/|liblinear]]: v1.51 
-  * [[http://afni.nimh.nih.gov/afni/|afni]]: gcc33_64 ( AFNI_2011_05_26_1457 ) 
-  * [[http://dicom.offis.de/dcmtk.php.en|Dicom Toolkit]]: v3.6.0 
-  * [[http://www-sop.inria.fr/asclepios/software/MedINRIA/|MedINRIA]]: v1.9.2 
-  * [[https://gforge.inria.fr/frs/?group_id=2533|TTK interface]]: v1.4.0   
-  * [[http://www.openbioinformatics.org/gengen/index.html|GenGen]] 
-  * [[http://genepath.med.harvard.edu/~reich/Software.htm|Eigensoft]]: v3.0 
-  * [[http://pngu.mgh.harvard.edu/~purcell/plink/|PLINK]]: v1.07 
-  * [[http://www.med.unc.edu/bric/ideagroup/tools/projects-1/brain/pages-1/hammer|HAMMER]] 
-  * [[http://www.picsl.upenn.edu/ANTS/|ANTS]] 
-  * [[http://www.slicer.org/slicerWiki/index.php/Main_Page|Slicer3]]: v3.6.3 
-  * [[http://www.slicer.org/slicerWiki/index.php/Slicer4|Slicer4]]: v4.1.1 
-  * [[http://www.sci.utah.edu/software/13/370-atlaswerks.html|AtlasWerks]]: v0.1.3 
-  * [[http://www.nitrc.org/projects/dtiprep/|DTIPrep]]: v1.1.6 
-  * [[http://trackvis.org/dtk/|DTK]]: v0.6.2.1 
-  * [[http://trackvis.org/|TrackVis]]: v0.5.1 
-  * [[http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php|Camino]]: r1221 
-  * [[http://www.nitrc.org/projects/camino-trackvis/|camino-trackvis]] 
-  * [[http://www.cmtk.org/|Connectome Mapping Toolkit]]: v1.2.0 
-  * [[http://www.cabiatl.com/mricro/mricron/main.html|MRICron]] 
-  * [[http://www.cs.waikato.ac.nz/ml/weka/|Weka]]: v3.6.6 
-  * [[http://dsi-studio.labsolver.org/|DSI Studio]] 
-  * [[http://www.brain.org.au/software/mrtrix/|MRTrix]]: v0.2.12 
-  * [[http://www.itksnap.org/pmwiki/pmwiki.php|ITK-SNAP]]: v3.2.0 
-  * [[http://www.r-project.org/|R]]: v3.1.2 
- 
-^ Python Tools  ^ Matlab 2013a        ^ SPM8 Toolboxes ^ 
-| SciPy         | BIAC Tools          | ArtRepair      | 
-| Numpy         | spm8                | DARTEL         | 
-| PyQt4         | NIFTI Libraries     | Diffusion TB   | 
-| nifticlibs    | fslroi              | Marsbar        | 
-| python-mvpa   | libsvm-3.0          | vbm8           | 
-| python-nifti  | WFU_PickAtlas_3.0.1 | Volumes TB     | 
-| pydicom       | Art                 | LST            | 
-| nibabel       | Spider              | DRIFTER        | 
-| matplotlib    | GIFT                | CONN           | 
-| tkinter       | 
-| ctypeslib     | 
-| python-mvpa2  | 
-| cfflib        | 
-| RPy2          | 
-| networkx      | 
-| statsmodels   | 
-| pysurfer      | 
-| [[http://martinos.org/mne/mne-python.html|mne]] | 
biac/cluster/packages.txt · Last modified: 2023/02/23 18:43 (external edit)

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