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biac:cluster:packages [2016/02/02 16:36] cmp12 |
biac:cluster:packages [2023/02/23 18:43] |
====== Installed Packages ====== | |
OS: Scientific Linux 6.4 | |
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* [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.0**, v1.10.9, v1.10.8, v1.10.7 | |
* [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.9, v5.0.6, v5.0.5, **v5.0.1** ( default ) , v4.1.9, v4.1.8, v4.1.6, v4.1.5, v4.1.4, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) | |
* [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v5.3.0 ( default )**, v5.1.0, v5.0.0, v4.5.0 (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version) | |
* [[http://hawking.biac.duke.edu/docs/fscan/|fscan]] | |
* [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]] | |
* [[http://www.csie.ntu.edu.tw/~cjlin/libsvm/|libsvm]]: v2.9 | |
* [[http://www.csie.ntu.edu.tw/~cjlin/liblinear/|liblinear]]: v1.51 | |
* [[http://afni.nimh.nih.gov/afni/|afni]]: gcc33_64 ( AFNI_2011_05_26_1457 ) | |
* [[http://dicom.offis.de/dcmtk.php.en|Dicom Toolkit]]: v3.6.0 | |
* [[http://www-sop.inria.fr/asclepios/software/MedINRIA/|MedINRIA]]: v1.9.2 | |
* [[https://gforge.inria.fr/frs/?group_id=2533|TTK interface]]: v1.4.0 | |
* [[http://www.openbioinformatics.org/gengen/index.html|GenGen]] | |
* [[http://genepath.med.harvard.edu/~reich/Software.htm|Eigensoft]]: v3.0 | |
* [[http://pngu.mgh.harvard.edu/~purcell/plink/|PLINK]]: v1.07 | |
* [[http://www.med.unc.edu/bric/ideagroup/tools/projects-1/brain/pages-1/hammer|HAMMER]] | |
* [[http://www.picsl.upenn.edu/ANTS/|ANTS]] | |
* [[http://www.slicer.org/slicerWiki/index.php/Main_Page|Slicer3]]: v3.6.3 | |
* [[http://www.slicer.org/slicerWiki/index.php/Slicer4|Slicer4]]: v4.1.1 | |
* [[http://www.sci.utah.edu/software/13/370-atlaswerks.html|AtlasWerks]]: v0.1.3 | |
* [[http://www.nitrc.org/projects/dtiprep/|DTIPrep]]: v1.1.6 | |
* [[http://trackvis.org/dtk/|DTK]]: v0.6.2.1 | |
* [[http://trackvis.org/|TrackVis]]: v0.5.1 | |
* [[http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php|Camino]]: r1221 | |
* [[http://www.nitrc.org/projects/camino-trackvis/|camino-trackvis]] | |
* [[http://www.cmtk.org/|Connectome Mapping Toolkit]]: v1.2.0 | |
* [[http://www.cabiatl.com/mricro/mricron/main.html|MRICron]] | |
* [[http://www.cs.waikato.ac.nz/ml/weka/|Weka]]: v3.6.6 | |
* [[http://dsi-studio.labsolver.org/|DSI Studio]] | |
* [[http://www.brain.org.au/software/mrtrix/|MRTrix]]: v0.2.12 | |
* [[http://www.itksnap.org/pmwiki/pmwiki.php|ITK-SNAP]]: v3.2.0 | |
* [[http://www.r-project.org/|R]]: v3.1.2 | |
| |
^ Python Tools ^ Matlab 2013a ^ SPM8 Toolboxes ^ | |
| SciPy | BIAC Tools | ArtRepair | | |
| Numpy | spm8 | DARTEL | | |
| PyQt4 | NIFTI Libraries | Diffusion TB | | |
| nifticlibs | fslroi | Marsbar | | |
| python-mvpa | libsvm-3.0 | vbm8 | | |
| python-nifti | WFU_PickAtlas_3.0.1 | Volumes TB | | |
| pydicom | Art | LST | | |
| nibabel | Spider | DRIFTER | | |
| matplotlib | GIFT | CONN | | |
| tkinter | | |
| ctypeslib | | |
| python-mvpa2 | | |
| cfflib | | |
| RPy2 | | |
| networkx | | |
| statsmodels | | |
| pysurfer | | |
| [[http://martinos.org/mne/mne-python.html|mne]] | | |
| [[https://github.com/fmfn/UnbalancedDataset|UnbalancedDataset]] | | |
| [[http://statsmodels.sourceforge.net/stable/index.html|statsmodels]] | | |