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biac:cluster:packages [2018/08/21 19:33]
cmp12 		biac:cluster:packages [2023/02/23 18:43]
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-====== Installed Packages ====== 
-OS: Scientific Linux release 7.4 (Nitrogen) 
- 
-  * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13** 
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.10, **v5.0.9**, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: v6.0.1, **v6.0.0**, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version) 
-  * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]] 
-  * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]  
-  * [[http://www.csie.ntu.edu.tw/~cjlin/libsvm/|libsvm]]: v2.9 
-  * [[http://www.csie.ntu.edu.tw/~cjlin/liblinear/|liblinear]]: v1.51 
-  * [[http://afni.nimh.nih.gov/afni/|afni]]: openmp_64 ( AFNI_17.0.01 ) 
-  * [[http://dicom.offis.de/dcmtk.php.en|Dicom Toolkit]]: v3.6.1 
-  * [[http://www-sop.inria.fr/asclepios/software/MedINRIA/|MedINRIA]]: v2.2.3 
-  * [[http://www.picsl.upenn.edu/ANTS/|ANTS]]: **v2.3.1**, v2.2.0 
-  * [[http://www.slicer.org/slicerWiki/index.php/Slicer4|Slicer4]]: v4.6.4 
-  * [[http://www.nitrc.org/projects/dtiprep/|DTIPrep]]: v1.2.4 
-  * [[http://trackvis.org/dtk/|DTK]]: v0.6.4.1 
-  * [[http://trackvis.org/|TrackVis]]: v0.6.1 
-  * [[http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php|Camino]] 
-  * [[http://www.nitrc.org/projects/camino-trackvis/|camino-trackvis]] 
-  * [[http://www.cmtk.org/|Connectome Mapping Toolkit]]: v1.2.0 
-  * [[http://www.cabiatl.com/mricro/mricron/main.html|MRICron]] 
-  * [[http://www.cs.waikato.ac.nz/ml/weka/|Weka]]: v3.8.1 
-  * [[http://dsi-studio.labsolver.org/|DSI Studio]] 
-  * [[http://www.mrtrix.org/|MRTrix3]]: v3.0_RC2 
-  * [[http://www.itksnap.org/pmwiki/pmwiki.php|ITK-SNAP]]: v3.2.0 
-  * [[http://www.r-project.org/|R]]: v3.4.4 
-  * [[http://idealab.ucdavis.edu/software/utilities.php|idealab utilities]] 
-  * [[https://www.humanconnectome.org/software/connectome-workbench|Connectome Workbench]] 
-  * [[http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Documentation|C3D]] 
-  * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]] 
-  * [[http://simnibs.de/|simnibs]] 
-  * MATLAB : R2014a, **R2017a**, R2018a  
-  * Python : 2.7, 3.6 
-  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 2.5.2 
- 
-^ Python Tools  ^ Matlab 2017a        ^ SPM8 Toolboxes ^ 
-| SciPy         | BIAC Tools          | ArtRepair      | 
-| Numpy         | spm8                | DARTEL         | 
-| PyQt4         | NIFTI Libraries     | Diffusion TB   | 
-| nifticlibs    | fslroi              | Marsbar        | 
-| python-mvpa   | libsvm-3.0          | vbm8           | 
-| python-nifti  | WFU_PickAtlas_3.0.1 | Volumes TB     | 
-| pydicom       | Art                 | LST            | 
-| nibabel       | Spider              | DRIFTER        | 
-| matplotlib    | GIFT                | CONN           | 
-| tkinter       | Pls                 |                | 
-| ctypeslib     | 
-| python-mvpa2  | 
-| cfflib        | 
-| RPy2          | 
-| networkx      | 
-| statsmodels   | 
-| pysurfer      | 
  
biac/cluster/packages.txt · Last modified: 2023/02/23 18:43 (external edit)

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