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biac:cluster:packages [2018/08/21 19:53]
cmp12 		biac:cluster:packages [2023/02/23 18:43]
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-====== Installed Packages ====== 
-OS: Scientific Linux release 7.4 (Nitrogen) 
  
-  * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13** 
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.10, **v5.0.9**, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: v6.0.1, **v6.0.0**, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version) 
-  * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]] 
-  * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]  
-  * [[http://www.csie.ntu.edu.tw/~cjlin/libsvm/|libsvm]]: v2.9 
-  * [[http://www.csie.ntu.edu.tw/~cjlin/liblinear/|liblinear]]: v1.51 
-  * [[http://afni.nimh.nih.gov/afni/|afni]]: openmp_64 ( AFNI_17.0.01 ) 
-  * [[http://dicom.offis.de/dcmtk.php.en|Dicom Toolkit]]: v3.6.1 
-  * [[http://www-sop.inria.fr/asclepios/software/MedINRIA/|MedINRIA]]: v2.2.3 
-  * [[http://www.picsl.upenn.edu/ANTS/|ANTS]]: **v2.3.1**, v2.2.0 
-  * [[http://www.slicer.org/slicerWiki/index.php/Slicer4|Slicer4]]: v4.6.4 
-  * [[http://www.nitrc.org/projects/dtiprep/|DTIPrep]]: v1.2.4 
-  * [[http://trackvis.org/dtk/|DTK]]: v0.6.4.1 
-  * [[http://trackvis.org/|TrackVis]]: v0.6.1 
-  * [[http://web4.cs.ucl.ac.uk/research/medic/camino/pmwiki/pmwiki.php|Camino]] 
-  * [[http://www.nitrc.org/projects/camino-trackvis/|camino-trackvis]] 
-  * [[http://www.cmtk.org/|Connectome Mapping Toolkit]]: v1.2.0 
-  * [[http://www.cabiatl.com/mricro/mricron/main.html|MRICron]] 
-  * [[http://www.cs.waikato.ac.nz/ml/weka/|Weka]]: v3.8.1 
-  * [[http://dsi-studio.labsolver.org/|DSI Studio]] 
-  * [[http://www.mrtrix.org/|MRTrix3]]: v3.0_RC2 
-  * [[http://www.itksnap.org/pmwiki/pmwiki.php|ITK-SNAP]]: v3.2.0 
-  * [[http://www.r-project.org/|R]]: v3.4.4 
-  * [[http://idealab.ucdavis.edu/software/utilities.php|idealab utilities]] 
-  * [[https://www.humanconnectome.org/software/connectome-workbench|Connectome Workbench]] 
-  * [[http://www.itksnap.org/pmwiki/pmwiki.php?n=Convert3D.Documentation|C3D]] 
-  * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]] 
-  * [[http://simnibs.de/|simnibs]] 
-  * MATLAB : R2014a, **R2017a**, R2018a  
-  * Python : 2.7, 3.6 
-  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 2.5.2 
- 
-^ Matlab 2017a        ^ SPM8 Toolboxes ^ 
-| BIAC Tools          | ArtRepair      | 
-| spm8                | DARTEL         | 
-| NIFTI Libraries     | Diffusion TB   | 
-| fslroi              | Marsbar        | 
-| libsvm-3.0          | vbm8           | 
-| WFU_PickAtlas_3.0.1 | Volumes TB     | 
-| Art                 | LST            | 
-| Spider              | DRIFTER        | 
-| GIFT                | CONN           | 
-| Pls                 |                | 
- 
- 
- 
-^ python3.6 ^ python2.7 ^  
-|apipkg==1.5|amico==1.0| 
-|atomicwrites==1.1.5|apptools==4.4.0| 
-|attrs==18.1.0|argh==0.26.2| 
-|backcall==0.1.0|asn1crypto==0.22.0| 
-|certifi==2018.8.13|backports-abc==0.5| 
-|chardet==3.0.4|backports.functools-lru-cache==1.5| 
-|citeproc-py==0.4.0|backports.shutil-get-terminal-size==1.0.0| 
-|click==6.7|backports.ssl-match-hostname==3.4.0.2| 
-|cloudpickle==0.5.3|backports.weakref==1.0.post1| 
-|configparser==3.5.0|bleach==1.5.0| 
-|cycler==0.10.0|bxh==0.9| 
-|dask==0.18.2|certifi==2017.4.17| 
-|decorator==4.3.0|cffi==1.10.0| 
-|dipy==0.14.0|cfflib==2.0.5| 
-|duecredit==0.6.4|chardet==2.2.1| 
-|execnet==1.5.0|click==6.7| 
-|fmriprep==1.1.4|configobj==4.7.2| 
-|funcsigs==1.0.2|configparser==3.5.0| 
-|future==0.16.0|Connectome-Mapper==1.2.0| 
-|grabbit==0.2.2|cryptography==1.9| 
-|h5py==2.8.0|cycler==0.10.0| 
-|idna==2.7|decorator==3.4.0| 
-|indexed-gzip==0.8.7|dipy==0.11.0| 
-|ipython==6.5.0|docutils==0.13.1| 
-|ipython-genutils==0.2.0|empy==3.3.2| 
-|isodate==0.6.0|entrypoints==0.2.3| 
-|jedi==0.12.1|enum34==1.1.6| 
-|Jinja2==2.10|ez-setup==0.9| 
-|kiwisolver==1.0.1|funcsigs==1.0.2| 
-|lockfile==0.12.2|functools32==3.2.3.post2| 
-|lxml==4.2.4|future==0.16.0| 
-|MarkupSafe==1.0|futures==3.2.0| 
-|matplotlib==2.2.3|grabbit==0.1.1| 
-|mock==2.0.0|html5lib==0.9999999| 
-|more-itertools==4.3.0|idna==2.5| 
-|mpmath==1.0.0|indexed-gzip==0.8.6| 
-|mriqc==0.13.1|iniparse==0.4| 
-|networkx==2.1|ipaddress==1.0.18| 
-|nibabel==2.3.0|IPy==0.75| 
-|nilearn==0.4.2|ipykernel==4.6.1| 
-|nipy==0.4.2|ipython==5.4.1| 
-|nipype==1.1.2|ipython-genutils==0.2.0| 
-|nitime==0.7|ipywidgets==6.0.0| 
-|niworkflows==0.4.2|isodate==0.5.4| 
-|num2words==0.5.7|javapackages==1.0.0| 
-|numpy==1.15.0|Jinja2==2.9.6| 
-|packaging==17.1|jsonschema==2.6.0| 
-|pandas==0.23.4|jupyter==1.0.0| 
-|parso==0.3.1|jupyter-client==5.0.1| 
-|patsy==0.5.0|jupyter-console==5.1.0| 
-|pbr==4.2.0|jupyter-core==4.3.0| 
-|pexpect==4.6.0|Keras==2.1.2| 
-|pickleshare==0.7.4|kitchen==1.1.1| 
-|Pillow==5.2.0|kiwisolver==1.0.1| 
-|pluggy==0.7.1|Lasagne==0.1| 
-|prompt-toolkit==1.0.15|line-profiler==2.1.2| 
-|prov==1.5.0|lockfile==0.12.2| 
-|ptyprocess==0.6.0|lxml==3.2.1| 
-|py==1.5.4|Markdown==2.6.10| 
-|pybids==0.6.4|MarkupSafe==1.0| 
-|pydot==1.2.4|matplotlib==2.2.2| 
-|pydotplus==2.0.2|mistune==0.7.4| 
-|Pygments==2.2.0|mock==2.0.0| 
-|pyparsing==2.2.0|mpmath==0.19| 
-|pytest==3.7.1|nbconvert==5.2.1| 
-|pytest-forked==0.2|nbformat==4.3.0| 
-|pytest-xdist==1.22.5|netifaces==0.10.4| 
-|python-dateutil==2.7.3|networkx==1.11| 
-|pytz==2018.5|nibabel==2.3.0| 
-|PyWavelets==0.5.2|nilearn==0.3.0| 
-|PyYAML==3.13|nipy==0.4.1| 
-|rdflib==4.2.2|nipype==1.1.0| 
-|requests==2.19.1|nitime==0.7| 
-|scikit-image==0.14.0|niworkflows==0.4.2| 
-|scikit-learn==0.19.2|nose==1.3.7| 
-|scipy==1.1.0|notebook==5.0.0| 
-|seaborn==0.9.0|num2words==0.5.6| 
-|simplegeneric==0.8.1|numpy==1.14.5| 
-|simplejson==3.16.0|olefile==0.44| 
-|six==1.11.0|packaging==16.8| 
-|sklearn==0.0|pandas==0.20.2| 
-|statsmodels==0.9.0|pandocfilters==1.4.1| 
-|svgutils==0.3.0|paramiko==2.1.2| 
-|sympy==1.2|pathlib2==2.2.1| 
-|toolz==0.9.0|pathtools==0.1.2| 
-|traitlets==4.3.2|patsy==0.4.1| 
-|traits==4.6.0|pbr==3.1.1| 
-|urllib3==1.23|perf==0.1| 
-|versioneer==0.18|pexpect==4.2.1| 
-|wcwidth==0.1.7|pickleshare==0.7.4| 
-|xvfbwrapper==0.2.9|Pillow==4.1.1| 
-| |policycoreutils-default-encoding==0.1| 
-| |prompt-toolkit==1.0.14| 
-| |protobuf==3.5.1| 
-| |prov==1.5.0| 
-| |psycopg2==2.7.1| 
-| |ptyprocess==0.5.1| 
-| |py==1.4.34| 
-| |pyasn1==0.2.3| 
-| |pybids==0.5.1| 
-| |pycparser==2.17| 
-| |pycrypto==2.6.1| 
-| |pycurl==7.19.0| 
-| |pydeface==1.0| 
-| |pydicom==0.9.9| 
-| |pydot==1.2.3| 
-| |pydotplus==2.0.2| 
-| |pyface==5.1.0| 
-| |PyFFTW3==0.2.1| 
-| |Pygments==2.2.0| 
-| |pygobject==3.22.0| 
-| |pygpgme==0.3| 
-| |pyliblzma==0.5.3| 
-| |pymer4==0.0.1| 
-| |pymvpa2==2.6.1| 
-| |pyparsing==2.2.0| 
-| |pytest==3.1.2| 
-| |python-daemon==2.1.2| 
-| |python-dateutil==2.6.0| 
-| |python-linux-procfs==0.4.9| 
-| |pytz==2017.2| 
-| |pyudev==0.15| 
-| |PyWavelets==0.5.2| 
-| |pyxattr==0.5.1| 
-| |PyYAML==3.12| 
-| |pyzmq==16.0.2| 
-| |qtconsole==4.3.0| 
-| |rdflib==4.2.2| 
-| |rpy2==2.8.6| 
-| |scandir==1.5| 
-| |schedutils==0.4| 
-| |scikit-image==0.13.0| 
-| |scikit-learn==0.19.1| 
-| |scikit-neuralnetwork==0.7| 
-| |scikits.statsmodels==0.3.1| 
-| |scipy==1.1.0| 
-| |seaborn==0.7.1| 
-| |seobject==0.1| 
-| |sepolicy==1.1| 
-| |simplegeneric==0.8.1| 
-| |simplejson==3.10.0| 
-| |singledispatch==3.4.0.3| 
-| |six==1.11.0| 
-| |sklearn==0.0| 
-| |slip==0.4.0| 
-| |slip.dbus==0.4.0| 
-| |spams==2.6| 
-| |SSSDConfig==1.15.2| 
-| |statsmodels==0.8.0| 
-| |subprocess32==3.2.7| 
-| |svgutils==0.3.0| 
-| |sympy==1.0| 
-| |tensorflow==1.4.1| 
-| |tensorflow-tensorboard==0.4.0rc3| 
-| |terminado==0.6| 
-| |testpath==0.3.1| 
-| |Theano==0.9.0| 
-| |tinycss==0.4| 
-| |tornado==4.5.1| 
-| |traitlets==4.3.2| 
-| |traits==4.6.0| 
-| |traitsui==5.1.0| 
-| |urlgrabber==3.10| 
-| |versioneer==0.18| 
-| |virtualenv==15.1.0| 
-| |watchdog==0.8.3| 
-| |wcwidth==0.1.7| 
-| |webencodings==0.5.1| 
-| |Werkzeug==0.14.1| 
-| |widgetsnbextension==2.0.0| 
-| |wxPython==2.8.12.0| 
-| |wxPython-common==2.8.12.0| 
-| |xmltodict==0.11.0| 
-| |xvfbwrapper==0.2.9| 
-| |yum-metadata-parser==1.1.4| 
biac/cluster/packages.txt · Last modified: 2023/02/23 18:43 (external edit)

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