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biac:cluster:packages [2018/08/21 19:33]
cmp12 		biac:cluster:packages [2023/02/23 18:43] (current)
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 ====== Installed Packages ====== ====== Installed Packages ======
-OS: Scientific Linux release 7.4 (Nitrogen)+OS: Scientific Linux release 7.4 (Nitrogen) : updated 08/21/18 
  
   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.10, **v5.0.9**, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) +  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: **v6.0.3**, v6.0.0, v5.0.10, v5.0.9, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: v6.0.1, **v6.0.0**, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)+  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v7.1.1**, v6.0.1, v6.0.0, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)
   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]
   * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]    * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]] 
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   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]
   * [[http://simnibs.de/|simnibs]]   * [[http://simnibs.de/|simnibs]]
-  * MATLAB : R2014a, **R2017a**, R2018a +  * MATLAB :  **R2019b**, R2018a, R2017a, R2014a
   * Python : 2.7, 3.6   * Python : 2.7, 3.6
-  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 2.5.2+  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 3.6.3 
 +  * [[ https://github.com/Washington-University/HCPpipelines | HCP Pipelines ]]: 3.4.0
  
-^ Python Tools  ^ Matlab 2017a        ^ SPM8 Toolboxes ^ +^ Matlab 2017a        ^ SPM8 Toolboxes ^ 
-| SciPy         | BIAC Tools          | ArtRepair      | +| BIAC Tools          | ArtRepair      | 
-| Numpy         | spm8                | DARTEL         | +| spm8                | DARTEL         | 
-| PyQt4         | NIFTI Libraries     | Diffusion TB   | +| NIFTI Libraries     | Diffusion TB   | 
-| nifticlibs    | fslroi              | Marsbar        | +| fslroi              | Marsbar        | 
-| python-mvpa   | libsvm-3.0          | vbm8           | +| libsvm-3.0          | vbm8           | 
-| python-nifti  | WFU_PickAtlas_3.0.1 | Volumes TB     | +| WFU_PickAtlas_3.0.1 | Volumes TB     | 
-| pydicom       | Art                 | LST            | +| Art                 | LST            | 
-| nibabel       | Spider              | DRIFTER        | +| Spider              | DRIFTER        | 
-| matplotlib    | GIFT                | CONN           | +| GIFT                | CONN           | 
-| tkinter       | Pls                 |                | +| Pls                 |                |
-| ctypeslib     | +
-| python-mvpa2  | +
-| cfflib        | +
-| RPy2          | +
-| networkx      | +
-| statsmodels   | +
-| pysurfer      |+
  
 +
 +
 +^ python3.6 ^ python2.7 ^ 
 +|apipkg==1.5|amico==1.0|
 +|atomicwrites==1.1.5|apptools==4.4.0|
 +|attrs==18.1.0|argh==0.26.2|
 +|backcall==0.1.0|asn1crypto==0.22.0|
 +|certifi==2018.8.13|backports-abc==0.5|
 +|chardet==3.0.4|backports.functools-lru-cache==1.5|
 +|citeproc-py==0.4.0|backports.shutil-get-terminal-size==1.0.0|
 +|click==6.7|backports.ssl-match-hostname==3.4.0.2|
 +|cloudpickle==0.5.3|backports.weakref==1.0.post1|
 +|configparser==3.5.0|bleach==1.5.0|
 +|cycler==0.10.0|bxh==0.9|
 +|dask==0.18.2|certifi==2017.4.17|
 +|decorator==4.3.0|cffi==1.10.0|
 +|dipy==0.14.0|cfflib==2.0.5|
 +|duecredit==0.6.4|chardet==2.2.1|
 +|execnet==1.5.0|click==6.7|
 +|fmriprep==1.1.4|configobj==4.7.2|
 +|funcsigs==1.0.2|configparser==3.5.0|
 +|future==0.16.0|Connectome-Mapper==1.2.0|
 +|grabbit==0.2.2|cryptography==1.9|
 +|h5py==2.8.0|cycler==0.10.0|
 +|idna==2.7|decorator==3.4.0|
 +|indexed-gzip==0.8.7|dipy==0.11.0|
 +|ipython==6.5.0|docutils==0.13.1|
 +|ipython-genutils==0.2.0|empy==3.3.2|
 +|isodate==0.6.0|entrypoints==0.2.3|
 +|jedi==0.12.1|enum34==1.1.6|
 +|Jinja2==2.10|ez-setup==0.9|
 +|kiwisolver==1.0.1|funcsigs==1.0.2|
 +|lockfile==0.12.2|functools32==3.2.3.post2|
 +|lxml==4.2.4|future==0.16.0|
 +|MarkupSafe==1.0|futures==3.2.0|
 +|matplotlib==2.2.3|grabbit==0.1.1|
 +|mock==2.0.0|html5lib==0.9999999|
 +|more-itertools==4.3.0|idna==2.5|
 +|mpmath==1.0.0|indexed-gzip==0.8.6|
 +|mriqc==0.13.1|iniparse==0.4|
 +|networkx==2.1|ipaddress==1.0.18|
 +|nibabel==2.3.0|IPy==0.75|
 +|nilearn==0.4.2|ipykernel==4.6.1|
 +|nipy==0.4.2|ipython==5.4.1|
 +|nipype==1.1.2|ipython-genutils==0.2.0|
 +|nitime==0.7|ipywidgets==6.0.0|
 +|niworkflows==0.4.2|isodate==0.5.4|
 +|num2words==0.5.7|javapackages==1.0.0|
 +|numpy==1.15.0|Jinja2==2.9.6|
 +|packaging==17.1|jsonschema==2.6.0|
 +|pandas==0.23.4|jupyter==1.0.0|
 +|parso==0.3.1|jupyter-client==5.0.1|
 +|patsy==0.5.0|jupyter-console==5.1.0|
 +|pbr==4.2.0|jupyter-core==4.3.0|
 +|pexpect==4.6.0|Keras==2.1.2|
 +|pickleshare==0.7.4|kitchen==1.1.1|
 +|Pillow==5.2.0|kiwisolver==1.0.1|
 +|pluggy==0.7.1|Lasagne==0.1|
 +|prompt-toolkit==1.0.15|line-profiler==2.1.2|
 +|prov==1.5.0|lockfile==0.12.2|
 +|ptyprocess==0.6.0|lxml==3.2.1|
 +|py==1.5.4|Markdown==2.6.10|
 +|pybids==0.6.4|MarkupSafe==1.0|
 +|pydot==1.2.4|matplotlib==2.2.2|
 +|pydotplus==2.0.2|mistune==0.7.4|
 +|Pygments==2.2.0|mock==2.0.0|
 +|pyparsing==2.2.0|mpmath==0.19|
 +|pytest==3.7.1|nbconvert==5.2.1|
 +|pytest-forked==0.2|nbformat==4.3.0|
 +|pytest-xdist==1.22.5|netifaces==0.10.4|
 +|python-dateutil==2.7.3|networkx==1.11|
 +|pytz==2018.5|nibabel==2.3.0|
 +|PyWavelets==0.5.2|nilearn==0.3.0|
 +|PyYAML==3.13|nipy==0.4.1|
 +|rdflib==4.2.2|nipype==1.1.0|
 +|requests==2.19.1|nitime==0.7|
 +|scikit-image==0.14.0|niworkflows==0.4.2|
 +|scikit-learn==0.19.2|nose==1.3.7|
 +|scipy==1.3.0|notebook==5.0.0|
 +|seaborn==0.9.0|num2words==0.5.6|
 +|simplegeneric==0.8.1|numpy==1.14.5|
 +|simplejson==3.16.0|olefile==0.44|
 +|six==1.11.0|packaging==16.8|
 +|sklearn==0.0|pandas==0.20.2|
 +|statsmodels==0.9.0|pandocfilters==1.4.1|
 +|svgutils==0.3.0|paramiko==2.1.2|
 +|sympy==1.2|pathlib2==2.2.1|
 +|toolz==0.9.0|pathtools==0.1.2|
 +|traitlets==4.3.2|patsy==0.4.1|
 +|traits==4.6.0|pbr==3.1.1|
 +|urllib3==1.23|perf==0.1|
 +|versioneer==0.18|pexpect==4.2.1|
 +|wcwidth==0.1.7|pickleshare==0.7.4|
 +|xvfbwrapper==0.2.9|Pillow==4.1.1|
 +|virtualenv==16.0.0 |policycoreutils-default-encoding==0.1|
 +| |prompt-toolkit==1.0.14|
 +| |protobuf==3.5.1|
 +| |prov==1.5.0|
 +| |psycopg2==2.7.1|
 +| |ptyprocess==0.5.1|
 +| |py==1.4.34|
 +| |pyasn1==0.2.3|
 +| |pybids==0.5.1|
 +| |pycparser==2.17|
 +| |pycrypto==2.6.1|
 +| |pycurl==7.19.0|
 +| |pydeface==1.0|
 +| |pydicom==0.9.9|
 +| |pydot==1.2.3|
 +| |pydotplus==2.0.2|
 +| |pyface==5.1.0|
 +| |PyFFTW3==0.2.1|
 +| |Pygments==2.2.0|
 +| |pygobject==3.22.0|
 +| |pygpgme==0.3|
 +| |pyliblzma==0.5.3|
 +| |pymer4==0.0.1|
 +| |pymvpa2==2.6.1|
 +| |pyparsing==2.2.0|
 +| |pytest==3.1.2|
 +| |python-daemon==2.1.2|
 +| |python-dateutil==2.6.0|
 +| |python-linux-procfs==0.4.9|
 +| |pytz==2017.2|
 +| |pyudev==0.15|
 +| |PyWavelets==0.5.2|
 +| |pyxattr==0.5.1|
 +| |PyYAML==3.12|
 +| |pyzmq==16.0.2|
 +| |qtconsole==4.3.0|
 +| |rdflib==4.2.2|
 +| |rpy2==2.8.6|
 +| |scandir==1.5|
 +| |schedutils==0.4|
 +| |scikit-image==0.13.0|
 +| |scikit-learn==0.19.1|
 +| |scikit-neuralnetwork==0.7|
 +| |scikits.statsmodels==0.3.1|
 +| |scipy==1.3.0|
 +| |seaborn==0.7.1|
 +| |seobject==0.1|
 +| |sepolicy==1.1|
 +| |simplegeneric==0.8.1|
 +| |simplejson==3.10.0|
 +| |singledispatch==3.4.0.3|
 +| |six==1.11.0|
 +| |sklearn==0.0|
 +| |slip==0.4.0|
 +| |slip.dbus==0.4.0|
 +| |spams==2.6|
 +| |SSSDConfig==1.15.2|
 +| |statsmodels==0.8.0|
 +| |subprocess32==3.2.7|
 +| |svgutils==0.3.0|
 +| |sympy==1.0|
 +| |tensorflow==1.4.1|
 +| |tensorflow-tensorboard==0.4.0rc3|
 +| |terminado==0.6|
 +| |testpath==0.3.1|
 +| |Theano==0.9.0|
 +| |tinycss==0.4|
 +| |tornado==4.5.1|
 +| |traitlets==4.3.2|
 +| |traits==4.6.0|
 +| |traitsui==5.1.0|
 +| |urlgrabber==3.10|
 +| |versioneer==0.18|
 +| |virtualenv==15.1.0|
 +| |watchdog==0.8.3|
 +| |wcwidth==0.1.7|
 +| |webencodings==0.5.1|
 +| |Werkzeug==0.14.1|
 +| |widgetsnbextension==2.0.0|
 +| |wxPython==2.8.12.0|
 +| |wxPython-common==2.8.12.0|
 +| |xmltodict==0.11.0|
 +| |xvfbwrapper==0.2.9|
 +| |yum-metadata-parser==1.1.4|
biac/cluster/packages.1534880012.txt.gz · Last modified: 2018/08/21 19:33 by cmp12

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