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biac:cluster:packages [2018/08/21 19:51]
cmp12 		biac:cluster:packages [2023/02/23 18:43] (current)
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 ====== Installed Packages ====== ====== Installed Packages ======
-OS: Scientific Linux release 7.4 (Nitrogen)+OS: Scientific Linux release 7.4 (Nitrogen) : updated 08/21/18 
  
   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.10, **v5.0.9**, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) +  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: **v6.0.3**, v6.0.0, v5.0.10, v5.0.9, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: v6.0.1, **v6.0.0**, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)+  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v7.1.1**, v6.0.1, v6.0.0, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)
   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]
   * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]    * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]] 
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   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]
   * [[http://simnibs.de/|simnibs]]   * [[http://simnibs.de/|simnibs]]
-  * MATLAB : R2014a, **R2017a**, R2018a +  * MATLAB :  **R2019b**, R2018a, R2017a, R2014a
   * Python : 2.7, 3.6   * Python : 2.7, 3.6
-  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 2.5.2+  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 3.6.3 
 +  * [[ https://github.com/Washington-University/HCPpipelines | HCP Pipelines ]]: 3.4.0
  
 ^ Matlab 2017a        ^ SPM8 Toolboxes ^ ^ Matlab 2017a        ^ SPM8 Toolboxes ^
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 |scikit-image==0.14.0|niworkflows==0.4.2| |scikit-image==0.14.0|niworkflows==0.4.2|
 |scikit-learn==0.19.2|nose==1.3.7| |scikit-learn==0.19.2|nose==1.3.7|
-|scipy==1.1.0|notebook==5.0.0|+|scipy==1.3.0|notebook==5.0.0|
 |seaborn==0.9.0|num2words==0.5.6| |seaborn==0.9.0|num2words==0.5.6|
 |simplegeneric==0.8.1|numpy==1.14.5| |simplegeneric==0.8.1|numpy==1.14.5|
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 |wcwidth==0.1.7|pickleshare==0.7.4| |wcwidth==0.1.7|pickleshare==0.7.4|
 |xvfbwrapper==0.2.9|Pillow==4.1.1| |xvfbwrapper==0.2.9|Pillow==4.1.1|
-||policycoreutils-default-encoding==0.1| +|virtualenv==16.0.0 |policycoreutils-default-encoding==0.1| 
-||prompt-toolkit==1.0.14| +| |prompt-toolkit==1.0.14| 
-||protobuf==3.5.1| +| |protobuf==3.5.1| 
-||prov==1.5.0| +| |prov==1.5.0| 
-||psycopg2==2.7.1| +| |psycopg2==2.7.1| 
-||ptyprocess==0.5.1| +| |ptyprocess==0.5.1| 
-||py==1.4.34| +| |py==1.4.34| 
-||pyasn1==0.2.3| +| |pyasn1==0.2.3| 
-||pybids==0.5.1| +| |pybids==0.5.1| 
-||pycparser==2.17| +| |pycparser==2.17| 
-||pycrypto==2.6.1| +| |pycrypto==2.6.1| 
-||pycurl==7.19.0| +| |pycurl==7.19.0| 
-||pydeface==1.0| +| |pydeface==1.0| 
-||pydicom==0.9.9| +| |pydicom==0.9.9| 
-||pydot==1.2.3| +| |pydot==1.2.3| 
-||pydotplus==2.0.2| +| |pydotplus==2.0.2| 
-||pyface==5.1.0| +| |pyface==5.1.0| 
-||PyFFTW3==0.2.1| +| |PyFFTW3==0.2.1| 
-||Pygments==2.2.0| +| |Pygments==2.2.0| 
-||pygobject==3.22.0| +| |pygobject==3.22.0| 
-||pygpgme==0.3| +| |pygpgme==0.3| 
-||pyliblzma==0.5.3| +| |pyliblzma==0.5.3| 
-||pymer4==0.0.1| +| |pymer4==0.0.1| 
-||pymvpa2==2.6.1| +| |pymvpa2==2.6.1| 
-||pyparsing==2.2.0| +| |pyparsing==2.2.0| 
-||pytest==3.1.2| +| |pytest==3.1.2| 
-||python-daemon==2.1.2| +| |python-daemon==2.1.2| 
-||python-dateutil==2.6.0| +| |python-dateutil==2.6.0| 
-||python-linux-procfs==0.4.9| +| |python-linux-procfs==0.4.9| 
-||pytz==2017.2| +| |pytz==2017.2| 
-||pyudev==0.15| +| |pyudev==0.15| 
-||PyWavelets==0.5.2| +| |PyWavelets==0.5.2| 
-||pyxattr==0.5.1| +| |pyxattr==0.5.1| 
-||PyYAML==3.12| +| |PyYAML==3.12| 
-||pyzmq==16.0.2| +| |pyzmq==16.0.2| 
-||qtconsole==4.3.0| +| |qtconsole==4.3.0| 
-||rdflib==4.2.2| +| |rdflib==4.2.2| 
-||rpy2==2.8.6| +| |rpy2==2.8.6| 
-||scandir==1.5| +| |scandir==1.5| 
-||schedutils==0.4| +| |schedutils==0.4| 
-||scikit-image==0.13.0| +| |scikit-image==0.13.0| 
-||scikit-learn==0.19.1| +| |scikit-learn==0.19.1| 
-||scikit-neuralnetwork==0.7| +| |scikit-neuralnetwork==0.7| 
-||scikits.statsmodels==0.3.1| +| |scikits.statsmodels==0.3.1| 
-||scipy==1.1.0| +| |scipy==1.3.0| 
-||seaborn==0.7.1| +| |seaborn==0.7.1| 
-||seobject==0.1| +| |seobject==0.1| 
-||sepolicy==1.1| +| |sepolicy==1.1| 
-||simplegeneric==0.8.1| +| |simplegeneric==0.8.1| 
-||simplejson==3.10.0| +| |simplejson==3.10.0| 
-||singledispatch==3.4.0.3| +| |singledispatch==3.4.0.3| 
-||six==1.11.0| +| |six==1.11.0| 
-||sklearn==0.0| +| |sklearn==0.0| 
-||slip==0.4.0| +| |slip==0.4.0| 
-||slip.dbus==0.4.0| +| |slip.dbus==0.4.0| 
-||spams==2.6| +| |spams==2.6| 
-||SSSDConfig==1.15.2| +| |SSSDConfig==1.15.2| 
-||statsmodels==0.8.0| +| |statsmodels==0.8.0| 
-||subprocess32==3.2.7| +| |subprocess32==3.2.7| 
-||svgutils==0.3.0| +| |svgutils==0.3.0| 
-||sympy==1.0| +| |sympy==1.0| 
-||tensorflow==1.4.1| +| |tensorflow==1.4.1| 
-||tensorflow-tensorboard==0.4.0rc3| +| |tensorflow-tensorboard==0.4.0rc3| 
-||terminado==0.6| +| |terminado==0.6| 
-||testpath==0.3.1| +| |testpath==0.3.1| 
-||Theano==0.9.0| +| |Theano==0.9.0| 
-||tinycss==0.4| +| |tinycss==0.4| 
-||tornado==4.5.1| +| |tornado==4.5.1| 
-||traitlets==4.3.2| +| |traitlets==4.3.2| 
-||traits==4.6.0| +| |traits==4.6.0| 
-||traitsui==5.1.0| +| |traitsui==5.1.0| 
-||urlgrabber==3.10| +| |urlgrabber==3.10| 
-||versioneer==0.18| +| |versioneer==0.18| 
-||virtualenv==15.1.0| +| |virtualenv==15.1.0| 
-||watchdog==0.8.3| +| |watchdog==0.8.3| 
-||wcwidth==0.1.7| +| |wcwidth==0.1.7| 
-||webencodings==0.5.1| +| |webencodings==0.5.1| 
-||Werkzeug==0.14.1| +| |Werkzeug==0.14.1| 
-||widgetsnbextension==2.0.0| +| |widgetsnbextension==2.0.0| 
-||wxPython==2.8.12.0| +| |wxPython==2.8.12.0| 
-||wxPython-common==2.8.12.0| +| |wxPython-common==2.8.12.0| 
-||xmltodict==0.11.0| +| |xmltodict==0.11.0| 
-||xvfbwrapper==0.2.9| +| |xvfbwrapper==0.2.9| 
-||yum-metadata-parser==1.1.4|+| |yum-metadata-parser==1.1.4|
biac/cluster/packages.1534881066.txt.gz · Last modified: 2018/08/21 19:51 by cmp12

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