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biac:cluster:packages [2018/08/21 19:53]
cmp12 		biac:cluster:packages [2023/02/23 18:43] (current)
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 ====== Installed Packages ====== ====== Installed Packages ======
-OS: Scientific Linux release 7.4 (Nitrogen)+OS: Scientific Linux release 7.4 (Nitrogen) : updated 08/21/18 
  
   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**   * [[http://wiki.biac.duke.edu/biac:xmlheader|bxh_xcede_tools]]: **v1.11.13**
-  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: v5.0.10, **v5.0.9**, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) +  * [[http://www.fmrib.ox.ac.uk/fsl/|FSL]]: **v6.0.3**, v6.0.0, v5.0.10, v5.0.9, v5.0.6, v5.0.5, v5.0.1, ( see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1619|post]] to use non-default versions ) 
-  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: v6.0.1, **v6.0.0**, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)+  * [[http://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes|Freesurfer]]: **v7.1.1**, v6.0.1, v6.0.0, v5.3.0, (see this [[http://www.biac.duke.edu/forums/topic.asp?TOPIC_ID=1387|post]] to change version)
   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]   * [[http://hawking.biac.duke.edu/docs/fscan/|fscan]]
   * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]]    * [[http://www.cabiatl.com/mricro/mricron/dcm2nii.html|dcm2nii]] 
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   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]   * [[https://github.com/maartenmennes/ICA-AROMA|ICA-AROMA]]
   * [[http://simnibs.de/|simnibs]]   * [[http://simnibs.de/|simnibs]]
-  * MATLAB : R2014a, **R2017a**, R2018a +  * MATLAB :  **R2019b**, R2018a, R2017a, R2014a
   * Python : 2.7, 3.6   * Python : 2.7, 3.6
-  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 2.5.2+  * [[https://singularity.lbl.gov/index.html | Singularity ]]: 3.6.3 
 +  * [[ https://github.com/Washington-University/HCPpipelines | HCP Pipelines ]]: 3.4.0
  
 ^ Matlab 2017a        ^ SPM8 Toolboxes ^ ^ Matlab 2017a        ^ SPM8 Toolboxes ^
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 |scikit-image==0.14.0|niworkflows==0.4.2| |scikit-image==0.14.0|niworkflows==0.4.2|
 |scikit-learn==0.19.2|nose==1.3.7| |scikit-learn==0.19.2|nose==1.3.7|
-|scipy==1.1.0|notebook==5.0.0|+|scipy==1.3.0|notebook==5.0.0|
 |seaborn==0.9.0|num2words==0.5.6| |seaborn==0.9.0|num2words==0.5.6|
 |simplegeneric==0.8.1|numpy==1.14.5| |simplegeneric==0.8.1|numpy==1.14.5|
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 |wcwidth==0.1.7|pickleshare==0.7.4| |wcwidth==0.1.7|pickleshare==0.7.4|
 |xvfbwrapper==0.2.9|Pillow==4.1.1| |xvfbwrapper==0.2.9|Pillow==4.1.1|
-| |policycoreutils-default-encoding==0.1|+|virtualenv==16.0.0 |policycoreutils-default-encoding==0.1|
 | |prompt-toolkit==1.0.14| | |prompt-toolkit==1.0.14|
 | |protobuf==3.5.1| | |protobuf==3.5.1|
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 | |scikit-neuralnetwork==0.7| | |scikit-neuralnetwork==0.7|
 | |scikits.statsmodels==0.3.1| | |scikits.statsmodels==0.3.1|
-| |scipy==1.1.0|+| |scipy==1.3.0|
 | |seaborn==0.7.1| | |seaborn==0.7.1|
 | |seobject==0.1| | |seobject==0.1|
biac/cluster/packages.1534881215.txt.gz · Last modified: 2018/08/21 19:53 by cmp12

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