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biac:cluster:submit

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biac:cluster:submit [2020/02/11 17:45]
cmp12 [Job restrictions]
biac:cluster:submit [2021/10/19 13:01] (current)
cmp12
Line 87: Line 87:
   > qdel -U username   > qdel -U username
 ====== Template Script ====== ====== Template Script ======
-Jobs are usually written in bash. They are similar to local bash scripts in syntax and usage. In  addition, they contain cluster related directives identified by lines starting with " #$ ". These are used to send job related setup information to the cluster. Scripts also contain requests for access to experiment data. The BIAC template script is a good starting point for testing job submission and as a base script for all jobs. Begin, by making a copy of the template script. ​ +Jobs are usually written in bash. They are similar to local bash scripts in syntax and usage. In  addition, they contain cluster related directives identified by lines starting with " #$ ". These are used to send job related setup information to the cluster. Scripts also contain requests for access to experiment data. The BIAC template script is a good starting point for testing job submission and as a base script for all jobs. Begin, by making a copy of the template script ​below
- +
-  cp /​usr/​local/​packages/​qsub_templates/​basic.sh myscript.sh+
    
 The template script requests access to an experiment folder and lists its contents. It needs a valid BIAC Experiment Name (case-sensitive) that is accessible by the user. Submit myscript.sh using qsub . The template script requests access to an experiment folder and lists its contents. It needs a valid BIAC Experiment Name (case-sensitive) that is accessible by the user. Submit myscript.sh using qsub .
biac/cluster/submit.txt · Last modified: 2021/10/19 13:01 by cmp12