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--- biac:cluster:submit [2020/02/11 17:45]
cmp12 [Job restrictions]
+++ biac:cluster:submit [2023/02/23 18:43] (current)
@@ Line 87: / Line 87: @@
   > qdel -U username
 ====== Template Script ======
-Jobs are usually written in bash. They are similar to local bash scripts in syntax and usage. In  addition, they contain cluster related directives identified by lines starting with " #$ ". These are used to send job related setup information to the cluster. Scripts also contain requests for access to experiment data. The BIAC template script is a good starting point for testing job submission and as a base script for all jobs. Begin, by making a copy of the template script.
+Jobs are usually written in bash. They are similar to local bash scripts in syntax and usage. In  addition, they contain cluster related directives identified by lines starting with " #$ ". These are used to send job related setup information to the cluster. Scripts also contain requests for access to experiment data. The BIAC template script is a good starting point for testing job submission and as a base script for all jobs. Begin, by making a copy of the template script below.
-  cp /usr/local/packages/qsub_templates/basic.sh myscript.sh
 The template script requests access to an experiment folder and lists its contents. It needs a valid BIAC Experiment Name (case-sensitive) that is accessible by the user. Submit myscript.sh using qsub .

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