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biac:dtiprep [2014/07/29 19:19] – created voyvodicbiac:dtiprep [2014/07/29 20:10] voyvodic
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-DTIPrep+===== DTIPrep ===== 
 + 
 +Minimal instructions: 
 + 
 +On HUGIN:\\ 
 + * make sure you have gradient tables in a BXH file (e.g. from **dicom2bxh**)\\ 
 + * convert your DTI data to NRRD format (run **bxh2nrrd**)\\ 
 + * run **/usr/local/packages/DTIPrep/DTIPrep** (this will launch the GUI)\\ 
 +  * click the first icon (OpenNRRD) and then select your NRRD data file\\ 
 +  * click the **Protocol** tab\\ 
 +  * click the **Default** button (near the tab) to create a protocol\\ 
 +  * click **RunByProtocol** (bottom of window) to run the preprocessing\\ 
 +  * when it finishes you can use GUI tools to see a report (you are on your own there)\\ 
 +  * close the GUI\\ 
 + * you should now see a new ...QCed.NRRD file with your results\\ 
 + * use **nrrd2bxh** to create a BXH header for your new NRRD file\\ 
 + 
 +The resultant DTI dataset's BXH header can then be used for DTI fiber tracking using either **[[biac:dtk|bxh_rundtk]]** or **[[biac:medinria|bxh_runmedinria]]**. 
 + 
 + 
 +[[biac:analysis|Analysis]] - Go back to Analysis software page 
  
-On HUGIN: 
- * make sure you have gradient tables in a BXH file (e.g. from **dicom2bxh**) 
- * convert your DTI data to NRRD format (run **bxh2nrrd**) 
- * run **/usr/local/packages/DTIPrep/DTIPrep** (this will launch the GUI) 
-  
  
biac/dtiprep.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1