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biac:fsl [2013/01/07 14:14]
petty [FSL]
biac:fsl [2014/08/04 16:03]
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-=====FSL===== 
-FSL is the fMRI Software Library analysis package developed by the FMRIB laboratory at Oxford University. Useful FMRIB links are: 
  
-  * [[http://www.fmrib.ox.ac.uk/fsl|FSL]] - The FMRIB software homepage. 
-  * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Tutorial]] - The FMRIB course tutorial. 
- 
-On the BIAC cluster to change your FSL version: 
- 
-<code> 
-export FSLDIR=/usr/local/packages/fsl-5.0.1 
-. ${FSLDIR}/etc/fslconf/fsl.sh 
- 
-Then call the tools with the fullpath: 
-${FSLDIR}/bin/fsl 
-</code> 
-====FSL Workshop Material (12/9/2008)==== 
-FSL Overview: Rich Yaxley & O'Dhaniel Mullette-Gillman 
-  * {{:biac:fsl_preprocessing.pdf|fsl_preprocessing.pdf}} 
- 
-Experimental Design: McKell Carter & Amy Winecoff 
-  * {{:biac:notes_for_fsl_workshop.doc|notes_for_fsl_workshop.doc}} 
- 
-Advanced Experimental Design: David Smith & John Clithero 
-  * {{:biac:fsl_workshop_advanced_design.pdf|fsl_workshop_advanced_design.pdf}} 
-  * [[http://www.fmrib.ox.ac.uk/fsl/feat5/output.html]] 
- 
-Scripting: Chris Petty & Justin Meyer 
-  * [[:biac:fsl:guide#iii_writing_a_batch_script_for_fsl|Writing a Batch Script]] 
- 
-====BIAC FSL Guide==== 
-Step-by-step instructions for using FSL at BIAC can be found at: 
-  * [[biac:fsl:guide|FSL Guide]] 
- 
-A sample FSL analysis; requres access to the Class.01 directory. 
-  * [[biac:fsl:Class_Example|FSL Class Example: First Level]] 
-  * [[biac:fsl:Class_SecondLevel|FSL Class Example: Second Level]] 
- 
- 
- 
----- 
- 
-==== BIAC 2012/2013 Course Guide ==== 
-by Zoe Englander 
- 
-{{:biac:fslcourse.pdf| FSL 2013 }} 
-{{:biac:command_line_demo.pdf| Command Line demo}} 
biac/fsl.txt · Last modified: 2014/08/04 16:03 (external edit)