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=====FSL=====
FSL is the fMRI Software Library analysis package developed by the FMRIB laboratory at Oxford University. Useful FMRIB links are:

  * [[http://www.fmrib.ox.ac.uk/fsl|FSL]] - The FMRIB software homepage.
  * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Tutorial]] - The FMRIB course tutorial.


====FSL Workshop Material (12/9/2008)====
FSL Overview: Rich Yaxley & O'Dhaniel Mullette-Gillman
  * {{:biac:fsl_preprocessing.pdf|fsl_preprocessing.pdf}}

Experimental Design: McKell Carter & Amy Winecoff
  * {{:biac:notes_for_fsl_workshop.doc|notes_for_fsl_workshop.doc}}

Advanced Experimental Design: David Smith & John Clithero
  * {{:biac:fsl_workshop_advanced_design.pdf|fsl_workshop_advanced_design.pdf}}
  * [[http://www.fmrib.ox.ac.uk/fsl/feat5/output.html]]

Scripting: Chris Petty & Justin Meyer
  * [[:biac:fsl:guide#batching]]
  * [[:biac:fsl:guide#writing_a_batch_script_for_fsl]]


====BIAC FSL Guide====
Step-by-step instructions for using FSL at BIAC can be found at:
  * [[biac:fsl:guide|FSL Guide]]

A sample FSL analysis; requres access to the Class.01 directory.
  * [[biac:fsl:Class_Example|FSL Class Example: First Level]]
  * [[biac:fsl:Class_SecondLevel|FSL Class Example: Second Level]]

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