Brain Imaging & Analysis Center

FSL is the fMRI Software Library analysis package developed by the FMRIB laboratory at Oxford University. Useful FMRIB links are:

• FSL - The FMRIB software homepage.
• FSL Tutorial - The FMRIB course tutorial.

FSL Overview: Rich Yaxley & O'Dhaniel Mullette-Gillman

• fsl_preprocessing.pdf

Experimental Design: McKell Carter & Amy Winecoff

• notes_for_fsl_workshop.doc

Advanced Experimental Design: David Smith & John Clithero

• fsl_workshop_advanced_design.pdf
• http://www.fmrib.ox.ac.uk/fsl/feat5/output.html

Scripting: Chris Petty & Justin Meyer

• Writing a Batch Script

Step-by-step instructions for using FSL at BIAC can be found at:

• FSL Guide

A sample FSL analysis; requres access to the Class.01 directory.

• FSL Class Example: First Level
• FSL Class Example: Second Level