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--- biac:fsl [2014/08/04 16:03]
+++ biac:fsl [2023/02/23 18:43] (current)
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+=====FSL=====
+FSL is the fMRI Software Library analysis package developed by the FMRIB laboratory at Oxford University. Useful FMRIB links are:
+  * [[http://www.fmrib.ox.ac.uk/fsl|FSL]] - The FMRIB software homepage.
+  * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Tutorial]] - The FMRIB course tutorial.
+To change your FSL version:
+<code>
+export FSLDIR=/usr/local/packages/fsl-5.0.1
+. ${FSLDIR}/etc/fslconf/fsl.sh
+Then call the tools with the fullpath:
+${FSLDIR}/bin/fsl
+</code>
+====FSL Workshop Material (12/9/2008)====
+FSL Overview: Rich Yaxley & O'Dhaniel Mullette-Gillman
+  * {{:biac:fsl_preprocessing.pdf|fsl_preprocessing.pdf}}
+Experimental Design: McKell Carter & Amy Winecoff
+  * {{:biac:notes_for_fsl_workshop.doc|notes_for_fsl_workshop.doc}}
+Advanced Experimental Design: David Smith & John Clithero
+  * {{:biac:fsl_workshop_advanced_design.pdf|fsl_workshop_advanced_design.pdf}}
+  * [[http://www.fmrib.ox.ac.uk/fsl/feat5/output.html]]
+Scripting: Chris Petty & Justin Meyer
+  * [[:biac:fsl:guide#iii_writing_a_batch_script_for_fsl|Writing a Batch Script]]
+====BIAC FSL Guide====
+Step-by-step instructions for using FSL at BIAC can be found at:
+  * [[biac:fsl:guide|FSL Guide]]
+A sample FSL analysis; requres access to the Class.01 directory.
+  * [[biac:fsl:Class_Example|FSL Class Example: First Level]]
+  * [[biac:fsl:Class_SecondLevel|FSL Class Example: Second Level]]
+----
+==== BIAC 2012/2013 Course Guide ====
+by Zoe Englander
+{{:biac:fslcourse.pdf| FSL 2013 }}
+{{:biac:command_line_demo.pdf| Command Line demo}}
+{{:biac:roianalysis.ppt| ROI Analysis Tutorial}}

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