Brain Imaging & Analysis Center

User Tools

Site Tools

You are here: biac » biac » tools
biac:tools

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

biac:tools [2014/08/04 16:03]
 biac:tools [2023/02/23 18:43] (current)
Line 1: Line 1:
 +===== BIAC Software Tools =====
  
 +The Duke-UNC BIAC has made available a number of its software tools for the display and analysis of neuroimaging data. Below we have made an initial distribution of these tools freely available for individual use, subject to the terms of the attached [[biac::tools::copyright license]]. These tools have been tested on recent versions of MATLAB for Microsoft Windows, AIX, and Linux. 
 +
 +Included are a number of tools that facilitate the exploration of fMRI data. Of particular note are:
 +    * showsrs2 - A powerful viewing platform for 3- and 4-dimensional data. It supports transparent overlays, plotting of hemodynamic time courses, and display of data in any cardinal orientation.
 +    * bxhabsorb, writemr, readmr - A set of MATLAB tools for loading and writing data from a large number of formats. These tools are compatible with the BXH header format.
 +
 +These tools have been created by Francis Favorini, Syam Gadde, Charles Michelich, and the students, faculty, and staff of the Duke-UNC BIAC.
 +
 +===== Downloads =====
 +    * [[http://www.nitrc.org/projects/bxh_xcede_tools/|BIRN Xcede Tools]] - XML tools for linux/mac
 +    * {{:biac:biac_matlab_06172014.tgz|BIAC Matlab Tools - R2014a }}
 +    * [[http://www.biac.duke.edu/home/gadde/biactools-0.93.zip|BIAC Software Tools version 0.93]] (2.0 MB zip file). For MATLAB 7.0 and later on Windows; MATLAB 6.5 and later on Linux/AIX. See {{:biac:readme-0.93.txt|readme}} file for details.
 +    * [[http://www.biac.duke.edu/home/gadde/biactools-0.92.zip
 +|BIAC Software Tools version 0.92]] (2.1 MB zip file). For MATLAB 6.1 and 6.5 on Windows; MATLAB 6.1 and later on Linux/AIX. See {{:biac:readme-0.92.txt|readme}} file for details.
 +    * {{:biac:biactools-supplement1.zip|Supplementary tools}} (3 KB zip file) used in the laboratory exercises in the Functional Magnetic Resonance Imaging textbook by Huettel, Song, and McCarthy (Sinauer Associates, 2004). (Note: The main BIAC Software Tools file is also required.)
 +    * {{:biac:bxh2analyze.zip|Utility to generate Analyze headers from BXH headers}} (1.2 MB zip file).

Page Tools

Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
CC Attribution-Share Alike 4.0 International Donate Powered by PHP Valid HTML5 Valid CSS Driven by DokuWiki