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biac:analysis:resting_pipeline

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biac:analysis:resting_pipeline [2012/07/06 12:37] – [Step 7] gaddebiac:analysis:resting_pipeline [2012/07/09 18:57] – [Python/FSL Resting State Pipeline] admin
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                         run                         run
   -p func, --prefix=func   -p func, --prefix=func
-                        prefix for all resulting images, defaults to name of+                        prefix for all resulting images, defaults to name of                        
                         input                         input
 +  --t1=/path/to/BXH     bxh ( or nifti ) file for the anatomical T1
   -s 0,1,2,3, --steps=0,1,2,3   -s 0,1,2,3, --steps=0,1,2,3
                         comma seperated string of steps. 'all' will run                         comma seperated string of steps. 'all' will run
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                         AC point of reference image if not using standard MNI                         AC point of reference image if not using standard MNI
                         brain                         brain
-  --betfval=0.5         f value to use while skull stripping. default is 0.5+  --betfval=0.4         f value to use while skull stripping. default is 0.4 
 +  --anatbetfval=0.5     f value to use while skill stripping ANAT. default is 0.5
   --lpfreq=0.08         frequency cutoff for lowpass filtering in HZ.  default   --lpfreq=0.08         frequency cutoff for lowpass filtering in HZ.  default
                         is .08hz                         is .08hz
biac/analysis/resting_pipeline.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1