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biac:analysis:resting_pipeline

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biac:analysis:resting_pipeline [2012/07/09 18:59] – [Step 3] adminbiac:analysis:resting_pipeline [2012/07/09 19:02] – [Step 4] admin
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   * if your subject has already been normalized during standard pre-processing of other runs, please provide the flirt matrix from pre-stats with **--flirtmat** ( most likely example_func2standard.mat)   * if your subject has already been normalized during standard pre-processing of other runs, please provide the flirt matrix from pre-stats with **--flirtmat** ( most likely example_func2standard.mat)
     * this will apply the previously determined flirt matrix to your functional data instead of trying to calculate a new matrix based on the functionals.  the matrix from pre-stats was likely calculated using a high-resolution anatomical, also this will assure that your resting state runs are in the same space as the other runs from your subject.     * this will apply the previously determined flirt matrix to your functional data instead of trying to calculate a new matrix based on the functionals.  the matrix from pre-stats was likely calculated using a high-resolution anatomical, also this will assure that your resting state runs are in the same space as the other runs from your subject.
 +  * if you've provided at T1 anatomical image then this sequence is followed:
 +    * func-2-t1
 +    * t1-2-standard
 +    * flirt matrices are concatenated to create func-2-standard
 +  * if no T1 is provided, then the functional is used for the flirt normalization
  
 ==== Step 5 ====  ==== Step 5 ==== 
biac/analysis/resting_pipeline.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1