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biac:cluster:modules [2023/03/15 15:03] – [Setting Up and Maintaining Experiment Specific Conda Environments] cmp12biac:cluster:modules [2023/04/06 18:35] cmp12
Line 209: Line 209:
 </code>  </code> 
  
 +Add something else to your environment ( like R ):
 +<code>
 +(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ conda search r-base
 +
 +#if you don't see the version you want you can add additional channels
 +conda config --add channels conda-forge
 +conda config --set channel_priority strict
 +
 +#then search again
 +conda search r-base
 +
 +
 +#install the version you would like to use
 +(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ conda install r-base=4.2.2
 +
 +(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ which R
 +/mnt/munin/Song/Lab/Chris/myenv/bin/R
 +
 +(/mnt/munin/Song/Lab/Chris/myenv) [cmp12@blade29 ~]$ R --version
 +R version 4.2.2 (2022-10-31) -- "Innocent and Trusting"
 +Copyright (C) 2022 The R Foundation for Statistical Computing
 +Platform: x86_64-conda-linux-gnu (64-bit)
 +
 +
 +</code>
 +
 +
 +====== Other Software ======
 +
 +Matlab Libraries : /usr/local/packages/MATLAB
 +
 +Premade Singularity Images : /usr/local/packages/singularity/images/
  
  
biac/cluster/modules.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1