biac:fsl:guide
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biac:fsl:guide [2012/12/12 17:56] – [III. Writing a batch script for FSL] petty | biac:fsl:guide [2012/12/12 17:58] – [III. Writing a batch script for FSL] petty | ||
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====== III. Writing a batch script for FSL ====== | ====== III. Writing a batch script for FSL ====== | ||
If you have a lot of subjects or many runs to do the same analysis to, you may want to run a batch script to avoid tediously running the the rather slow FSL GUI. Batch scripts should be written on golgi using nedit. | If you have a lot of subjects or many runs to do the same analysis to, you may want to run a batch script to avoid tediously running the the rather slow FSL GUI. Batch scripts should be written on golgi using nedit. | ||
- | This script will run FEAT analysis, but requires 1)converted anat and func files and 2) a template. See [[biac: | + | This script will run FEAT analysis, but requires 1)converted anat and func files and 2) a template. See [[biac: |
Here's a sample **batchFSL** script: | Here's a sample **batchFSL** script: | ||
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done | done | ||
</ | </ | ||
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===== making a template .fsf file ===== | ===== making a template .fsf file ===== | ||
when making a batch file, you need to have a template file that has the outline for your FEAT analysis. | when making a batch file, you need to have a template file that has the outline for your FEAT analysis. |
biac/fsl/guide.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1