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--- jvs:fscan:manual:chapter2:reslice [2011/03/31 14:49] – external edit 127.0.0.1
+++ jvs:fscan:manual:chapter2:reslice [2019/12/30 15:06] – voyvodic
@@ Line 1: / Line 1: @@
 **fScan Reference Manual, Chapter 2 (CmdLineOptions): reslice**
 ===== Reslice -- Process each slice independently=====
-====usage:=====
+**usage:**\\
--reslice reslice_file newname sliceflag\\
+-reslice [reference] reslice_file newname sliceflag\\
 -reslice overlay newname sliceflag\\
 -reslice transform newname sliceflag\\
--reslice reslice nx ny nz orient xres yres zres tilt
+-reslice nvoxels nx ny nz [nt] newname sliceflag\\
+-reslice voxsize xres yres zres [tres] newname sliceflag\\
 ===== =====
+RESLICE generates a new data set by reslicing the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
   * RESLICE_FILE - The INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME.
 SLICEFLAG:
-    * 1 - Interpolate pixel values
+    * 1 - Interpolate pixel values (default)
     * 2 - Do not interpolate pixel values (default is usually interpolation)
     * 4 - reslice input to all timepoints in RESLICE_FILE; default is just 1 slice volume