Differences

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--- jvs:fscan:manual:chapter2:roistats [2023/10/18 17:58] – [-roi stats] voyvodic
+++ jvs:fscan:manual:chapter2:roistats [2023/10/18 18:09] – [-roi stats] voyvodic
@@ Line 64: / Line 64: @@
   * 4 - atlas areas
   * 8 - threshold (can combine with 1-4)
-  *
 NAME - save stats in file NAME, if specified
-VAL: If VAL > 0, only calculate for this mask value
+MASKVAL: If > 0, only calculate for this mask value
+PREFIX: string prepended to each data line in report
+PRFXHDR: string prepended to column header lines in report
+THRESH: explicit threshold level (default is current image threshold, or if FLAG&010000 default is 0.5)
+OFFROI: if FLAG&010000, OFFROI is ROI value indicating true-negative voxels
+IGNOREROI: if FLAG&010000, ROI value to ignore when making ROC curves
+ONROI: if FLAG&010000, ROI value indicating true-positive voxels for ROC curves
+NLVLS: Number threshold levels to calculate separately (default=1, or 10 if FLAG&010000)
-NLVLS: Number threshold levels to calculate separately (default=1)
+Note: If you want a PREFIX without specifying output file NAME you must include a MASKVAL (0 for default) to avoid syntax confusion.
 If input is a Surface:\\