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jvs:fscan:manual:chapter2 [2013/04/25 14:36] – voyvodic | jvs:fscan:manual:chapter2 [2024/06/21 15:44] (current) – external edit 127.0.0.1 |
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|[[jvs:fscan:manual:chapter2:accumulate|accumulate]]|-A|Accumulate values for calculating means, StDevs, and trial counts| | |[[jvs:fscan:manual:chapter2:accumulate|accumulate]]|-A|Accumulate values for calculating means, StDevs, and trial counts| |
|[[jvs:fscan:manual:chapter2:adapt|adapt]]| | | | |[[jvs:fscan:manual:chapter2:adapt|adapt]]| | | |
| |[[jvs:fscan:manual:chapter2:addtime|addtime]]| |Convert 3D images to 4D images| |
|[[jvs:fscan:manual:chapter2:align|align]]| |Auto-align images by optimizing mutual information | | |[[jvs:fscan:manual:chapter2:align|align]]| |Auto-align images by optimizing mutual information | |
|[[jvs:fscan:manual:chapter2:ample|ample]]| |Generate AMPLE normalized activation maps and stability plots| | |[[jvs:fscan:manual:chapter2:ample|ample]]| |Generate AMPLE normalized activation maps and stability plots| |
|[[jvs:fscan:manual:chapter2:browse|browse]]| |Select items from a list| | |[[jvs:fscan:manual:chapter2:browse|browse]]| |Select items from a list| |
|[[jvs:fscan:manual:chapter2:chdir|chdir]]| | | | |[[jvs:fscan:manual:chapter2:chdir|chdir]]| | | |
| |[[jvs:fscan:manual:chapter2:config|config]]| |Set parameter values at startup| |
|[[jvs:fscan:manual:chapter2:connect|connect]]| |Open an external port connection| | |[[jvs:fscan:manual:chapter2:connect|connect]]| |Open an external port connection| |
|[[jvs:fscan:manual:chapter2:convolve|convolve]]| |Convolve images using kernal matrix| | |[[jvs:fscan:manual:chapter2:convolve|convolve]]| |Convolve images using kernal matrix| |
|[[jvs:fscan:manual:chapter2:resample|resample]]| | | | |[[jvs:fscan:manual:chapter2:resample|resample]]| | | |
|[[jvs:fscan:manual:chapter2:reslice|reslice]]|-z|Resample a 3-D volume data set| | |[[jvs:fscan:manual:chapter2:reslice|reslice]]|-z|Resample a 3-D volume data set| |
|[[jvs:fscan:manual:chapter2:subset|resize]]|-s| | | |[[jvs:fscan:manual:chapter2:resize|resize]]|-s| | |
|[[jvs:fscan:manual:chapter2:rmap|rmap]]| |Map temporal fluctuations by condition| | |[[jvs:fscan:manual:chapter2:rmap|rmap]]| |Map temporal fluctuations by condition| |
|[[jvs:fscan:manual:chapter2:roi|roi]]|-b|print STDOUT ROI stats| | |[[jvs:fscan:manual:chapter2:roi|roi]]|-b|print STDOUT ROI stats| |
|[[jvs:fscan:manual:chapter2:simulate|simulate]]|-y| | | |[[jvs:fscan:manual:chapter2:simulate|simulate]]|-y| | |
|[[jvs:fscan:manual:chapter2:stability|stability]]|-d|Generate plots of changes in image position and intensity| | |[[jvs:fscan:manual:chapter2:stability|stability]]|-d|Generate plots of changes in image position and intensity| |
| |[[jvs:fscan:manual:chapter2:start|start]]| |Specify fScan one-time start-up options| |
|[[jvs:fscan:manual:chapter2:stats|stats]]| |Calculate simple mean, stdev, and count statistics| | |[[jvs:fscan:manual:chapter2:stats|stats]]| |Calculate simple mean, stdev, and count statistics| |
|[[jvs:fscan:manual:chapter2:stdev|stdev]]|-V|Generate variance images| | |[[jvs:fscan:manual:chapter2:stdev|stdev]]|-V|Generate variance images| |