BIAC Cluster Sample Scripts
All of the following scripts can be found on the head node under:
/usr/local/sge_templates/
If you are modifying any of the scripts, check for syntax errors before submitting a job.
> sh -n script.sh
bxh2analyze - Create Analyze or NIFTI files from BXH files
qa - Run fmri QA analyses on the cluster
FSL
BET - Brain Extraction Tool
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FDR - Calculate the false discovery rate (FDR) on 3rd Level/group FSL analysis
Freesurfer