jvs:fscan:manual:chapter2:stability
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fScan Reference Manual, Chapter 2 (CmdLineOptions): stability
Stability -- Calculate displacements of center-of-mass
usage: -stability flag outname refimg slice maxpct
- FLAG - can take on the following values:
- 0 - read dx/dy values for registration; OUT is treated as IN file/rec
- 1 - generate dx/dy/dz plots for each time point
- 2 - generate dx/dy/di plots for each slice separately
- 4 - censor images where dx or dy is greater than MAXPCT
- 8 - print volume motion parameters
- 16 - print image motion parameters
- 64 - report global X/Y motion values (mean, stdev, max)
- 128 - use the most frequent position as reference (otherwise use mean value)
- 3 - generate all plots (default)
- REFIMG - reference time point for image registration (default=0)
- SLICE - If specified, only that slice is done, otherwise all.
- MAXPCT - Used when motion censoring (FLAG & 4). Images with displacement greater than MAXPCT of a voxel will be omitted from further analysis (default MAXPCT = 25%).
See Also:
fScan Home,
fScan Manual,
CmdLineOptions,
Manual Help
jvs/fscan/manual/chapter2/stability.1304112135.txt.gz · Last modified: 2024/06/21 15:41 (external edit)