Differences

This shows you the differences between two versions of the page.

--- jvs:fscan:manual:chapter1:introduction [2011/09/08 15:44] – created voyvodic
+++ jvs:fscan:manual:chapter1:introduction [2024/06/21 15:44] (current) – external edit 127.0.0.1
@@ Line 2: / Line 2: @@
 ===== Introduction -- Basic Introduction to fScan =====
-====Overview Example====
+[[jvs:fscan:overview|fScanOverview]]
-Before attempting to analyze your own data you should look at a simple sample data set to get a feel for fScan's commands and interactive options.
-[[jvs:fscan:manual:chapter1:tutorial|Sample Data Tutorial]]
+[[jvs:fscan:manual:chapter1:differences|Differences between fScan and other fMRI packages]]
-====Organizing your data files====
+[[jvs:fscan:manual:chapter1:download|Downloading and installing]]
-Using fScan will generally involve Functional, Anatomical, and Behavioral data files. Although all the files need to be linked together to run a full analysis of the scan, some primary steps can be taken with only the Functional and Anatomical images.
-[[Functional and Anatomical Images]]
+[[jvs:fscan:manual:chapter1:tutorial|Tutorial]]
-[[Behavioral Data]]
-====Useful Tools====
+====Overview Example====
+Before attempting to analyze your own data you should look at a simple sample data set to get a feel for fScan's commands and interactive options.
-[[Visualization]]
+[[jvs:fscan:manual:chapter1:tutorial|Sample Data Tutorial]]
-[[Atlases]]
+====Organizing your data files====
+Using fScan will generally involve Functional, Anatomical, and Behavioral data files. Any number of different types of files can be linked and processed together in a single data [[jvs:fscan:manual:chapter1:workspace_file?s[]=workspace|Workspace]]. A complete description of a data Workspace can be stored in an XML workspace descriptor file ([[jvs:fscan:manual:chapter1:workspace_file?s[]=workspace|WDF]]). When running fScan you can have it load your various data files separately, or they can all be loaded together simply by accessing the workspace WDF file.
-[[Thresholding]]
+[[jvs:fscan:manual:chapter1:functional_and_anatomical_images|Functional and Anatomical Images]]
+[[jvs:fscan:manual:chapter1:behavioral_data|Behavioral Data]]
+====Useful Tools====
+[[jvs:fscan:manual:chapter1:visualization|Visualization]]
+[[jvs:fscan:manual:chapter1:atlases|Atlases]]
+[[jvs:fscan:manual:chapter1:thresholding|Thresholding]]