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--- jvs:fscan:manual:chapter2:invivo [2013/08/12 16:33]
voyvodic
+++ jvs:fscan:manual:chapter2:invivo [2014/08/04 16:03]
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-**fScan Reference Manual, Chapter 2 (CmdLineOptions): InVivo**
-===== Table InVivo -- Special case InVivo data tables =====
-**usage:**
- * **-table invivo TBLNAME 1 NAME**\\
- * **-table invivo TBLNAME 2 NAME**\\
- * **-table invivo TBLNAME 3 NAME**\\
- * **-table invivo TBLNAME 4 NAME**\\
- * **-table invivo TBLNAME 5 NAME**\\
- * **-table invivo TBLNAME 6 NAME**\\
- * **-table invivo TBLNAME 7 NAME**\\
- * **-table invivo TBLNAME 8 NAME**\\
-The TABLE INVIVO command is used for manipulating tables associated with data files on an InVivo DynaSuite image processing system. This is a special case addition to fScan's standard [[jvs:fscan:manual:chapter2:table|Table]] command.
-TBLNAME is the name of the data table being manipulated. In general this table should already exist (i.e., created by a previous [[jvs:fscan:manual:chapter2:table|Table]] command).
-FLAG
-  * 1 - make study table. Look for subdirs names Study#{...} in dir NAME
-  * 2 - make series table. NAME is DCM dir, look for subdirs named Series{...}
-  * 3 - make dicom table. Look for .dcm files in dir NAME get zpos, tpos from each
-  * 4 - make imagedata table. Look for ImageData subdirs within dir NAM. Look for .data and .gvr files in each subdir
-  * 5 - create bxh file NAME from dicom table
-  * 6 - create bxh file's named NAME_num.bxh from imagedata table, where num is row num
-  * 7 - create wdf file NAME from series table
-  * 8 - create/add wdf file NAME from imagedata table
-**See Also:**\\
-[[jvs:fscan:manual:chapter2:table|Table]]
-[[jvs:fscan|fScan Home]],
-[[jvs:fscan:manual|fScan Manual]],
-[[jvs:fscan:manual:chapter2|CmdLineOptions]],
-[[jvs:fscan:manual:help|Manual Help]]

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