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fScan Reference Manual, Chapter 2 (CmdLineOptions): overlay

Overlay --

usage:-overlay dataset [flag lowthreshval highthreshval]

This is used with a statmap command (e.g. -ttest, -correl).
The new map will be overlaid on the specified images (rather than shown in their own window).
The overlay occurs when data processing begins.


  • 1 FILTER - spatially smooth the overlay
  • 2 SECOND - if 2 maps are generated, show the second
  • 4 OPAQUE - make the overlay opaque
  • 8 THRESH - apply thresholds to the overlay
jvs/fscan/manual/chapter2/overlay.txt · Last modified: 2014/08/04 16:03 (external edit)