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--- jvs:fscan:manual:chapter2:reslice [2019/12/30 15:06]
voyvodic
+++ jvs:fscan:manual:chapter2:reslice [2023/02/23 18:43] (current)
@@ Line 7: / Line 7: @@
 -reslice nvoxels nx ny nz [nt] newname sliceflag\\
 -reslice voxsize xres yres zres [tres] newname sliceflag\\
+-reslice vsort sortref newname\\
+-reslice zsort sortref newname\\
 ===== =====
-RESLICE generates a new data set by reslicing the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
+RESLICE generates a new data set by resampling the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
-  * RESLICE_FILE - The INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME.
+  * reference - (default) the INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME. If omitted, RESLICE_FILE defaults to the previous image window.\\
+  * overlay -   \\
+  * transform - \\
+  * vsort - rearrange volume order. SORTREF can be "reverse" to simply reverse the volumes in time, or a 1D list of volume numbers, in which case the volumes will be written out in that order. \\
+  * zsort - rearrange slice order. SORTREF can be "reverse" to simply reverse the slice order, or a 1D list of slice numbers, in which case the slices will be written out in that order. \\
 SLICEFLAG:

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