fScan Reference Manual, Chapter 2 (CmdLineOptions): reslice
Reslice -- Process each slice independently
usage:
-reslice [reference] reslice_file newname sliceflag
-reslice overlay newname sliceflag
-reslice transform newname sliceflag
-reslice nvoxels nx ny nz [nt] newname sliceflag
-reslice voxsize xres yres zres [tres] newname sliceflag
-reslice vsort sortref newname
-reslice zsort sortref newname
RESLICE generates a new data set by resampling the current data set. If you specify a reference data set, as RESLICE_FILE, the new data set will have the dimensions of that reference data set, with every voxel transformed to the appropriate new locations for that slice orientation.
- reference - (default) the INFILE images will be resliced in the same orientation as the RESLICE_FILE, and written to the dataset NEWNAME. If omitted, RESLICE_FILE defaults to the previous image window.
- overlay -
- transform -
- vsort - rearrange volume order. SORTREF can be “reverse” to simply reverse the volumes in time, or a 1D list of volume numbers, in which case the volumes will be written out in that order.
- zsort - rearrange slice order. SORTREF can be “reverse” to simply reverse the slice order, or a 1D list of slice numbers, in which case the slices will be written out in that order.
SLICEFLAG:
- 1 - Interpolate pixel values (default)
- 2 - Do not interpolate pixel values (default is usually interpolation)
- 4 - reslice input to all timepoints in RESLICE_FILE; default is just 1 slice volume
See Also:
fScan Home,
fScan Manual,
CmdLineOptions,
Manual Help