Differences

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--- biac:analysis:physiological [2011/10/25 19:37]
petty [Physiological Correction Methods]
+++ biac:analysis:physiological [2011/11/03 18:41]
petty [AFNI]
@@ Line 14: / Line 14: @@
 <code>
-physio_create.py --bxh /path/to/run4.bxh --pdigm /path/to/pdigm5_12345_4_2 -f fsl --outpath /here/
+physio_create.py --bxh /path/to/run4.bxh --pdigm /path/to/pdigm5_12345_4_2 -f fsl --outpath /here/ --hz 100
 Program to produce formatted physiological data:
@@ Line 20: / Line 20: @@
     BXH and PDIGM required
     OUTPATH defaults to PWD
+    HZ sampling rate
     FORMAT: defaults to fsl
         - fsl = cardio,resp,TR pulse ( 3 column file )
@@ Line 33: / Line 34: @@
   -f string, --format=string
                         output format ( fsl,npm,afni )
+  --hz                  sampling rate is hz ( 100 )
   -o PATH, --outpath=PATH
                         location to store output files
@@ Line 41: / Line 43: @@
 Create the AFNI formated physiological text data.
-<code bash>physio_create.py -b Data/Func/20111025_12345/run004.bxh -p Data/Behav/12345/pdigm5_12345_4_2 -f afni</code>
+<code bash>physio_create.py -b Data/Func/20111025_12345/run004.bxh -p Data/Behav/12345/pdigm5_12345_4_2 -f afni --hz 100 </code>
 This would create my "cardiac.txt" and "respiration.txt".

Brain Imaging & Analysis Center