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biac:analysis:physiological [2022/01/20 14:46] cmp12 |
biac:analysis:physiological [2023/02/23 18:43] (current) |
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RetroTS will produce " | RetroTS will produce " | ||
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+ | === setup afni despike, retroicor and slicetime correction === | ||
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+ | < | ||
+ | python3 / | ||
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+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | -verb 1 | ||
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+ | </ | ||
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+ | The above will produce an afni script to throw out 2 timepoints, perform a despike, retroicor physio regression and slice time correction based on the RetroTS output and the physio TSV/json above. | ||
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+ | Convert the afni corrected output back to nii.gz to be used for other pre-processing if not using AFNI for all steps | ||
+ | |||
+ | < | ||
+ | bxh2analyze --niigz -s pb03.sub-00104_run-4_ricor_phys.r01.tshift+orig.HEAD sub-00104_run-4_physiocorrected | ||
+ | </ | ||
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- | ====== CIGAL pdigm specific ====== | + | ====== CIGAL pdigm specific |
[[biac: | [[biac: | ||