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biac:analysis:resting_pipeline
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| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
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biac:analysis:resting_pipeline [2013/09/17 13:59] admin [Step 6] |
biac:analysis:resting_pipeline [2016/11/08 15:28] cmp12 [Download Source] |
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| Line 17: | Line 17: | ||
| 4 - normalize data | 4 - normalize data | ||
| 5 - regress out WM/CSF | 5 - regress out WM/CSF | ||
| - | 6 - lowpass | + | 6 - bandpass |
| 7 - do parcellation and produce correlation matrix from label file | 7 - do parcellation and produce correlation matrix from label file | ||
| * or split it up: | * or split it up: | ||
| Line 415: | Line 415: | ||
| - | Still under-development | ||
| 3D VTK: | 3D VTK: | ||
| Line 422: | Line 421: | ||
| + | |||
| + | |||
| + | ---- | ||
| + | |||
| + | ===== Download Source ===== | ||
| + | {{: | ||
| + | - source files assume you have a working install of FSL and all imported python modules | ||
| + | - need a working install of the [[http:// | ||
| + | - will need to edit any paths that may be different at your install location ( FSL FAST segmentations of the MNI brain and base sets of ROIs ) | ||
| + | - **Chou et al. AJNAR(2012), | ||
| + | - fcdm algorithm adapted from **Dardo Tomasi, PNAS(2010), vol. 107, no. 21. 9885–9890** | ||
biac/analysis/resting_pipeline.txt · Last modified: 2023/02/23 18:43 (external edit)
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