| Both sides previous revision
Previous revision
Next revision
|
Previous revision
Next revision
Both sides next revision
|
biac:analysis [2013/10/01 19:12]
cmp12_sa |
biac:analysis [2019/02/19 17:15]
cmp12 [TOPUP Correction] |
| ===== Image Analysis software ===== | ===== BIAC Image Analysis software ===== |
| * [[biac:pipeline|Processing Pipeline]] - Automated MRI data transfer and preprocessing software. | * [[biac:pipeline|Processing Pipeline]] - Automated MRI data transfer and preprocessing software. |
| * [[biac:xmlheader|BXH/XCEDE tools]] - Series of tools for describing imaging data (including ''bxh_eventstats'') | * [[biac:xmlheader|BXH/XCEDE tools]] - Series of tools for describing imaging data (including ''bxh_eventstats'') |
| * [[biac:freesurfer|FreeSurfer]] - Cortical surface reconstruction software from Harvard University | * [[biac:freesurfer|FreeSurfer]] - Cortical surface reconstruction software from Harvard University |
| * [[biac:fsl|FSL]] - Statistical analysis software from Oxford University | * [[biac:fsl|FSL]] - Statistical analysis software from Oxford University |
| | * [[biac:dtiprep|DTIPrep]] - DTI QA and preprocessing software from NRRD |
| | * [[biac:dtk|DTK]] - Diffusion ToolKit for DTI analysis from Harvard |
| | * [[biac:medinria|MEDInria]] - DTI analysis from France |
| |
| ===== Other Analysis software ===== | ===== Other Analysis software ===== |
| * [[biac:analysis:resting_pipeline|Python/FSL Resting State Pipeline]] Documentation of the BIAC resting state pipeline | * [[biac:analysis:resting_pipeline|Python/FSL Resting State Pipeline]] Documentation of the BIAC resting state pipeline |
| * [[biac:analysis:physiological|Physiological Correction Methods]] Documentation of some local correction methods | * [[biac:analysis:physiological|Physiological Correction Methods]] Documentation of some local correction methods |
| | |
| | ====Structural Connectome Methods==== |
| | * [[biac:analysis:structural_connectome|Structural Connectome Pipeline]] Documentation of basic structural connectome methodology |
| | |
| | ====TOPUP Correction==== |
| | * [[biac:analy |
| | * [[biac:analysis:topup_correction|EPI Correction]] with polarity images using TOPUP |
| | * [[biac:analysis:topup_correction#dwi_correction_with_b0s_using_topup|DWI Correction]] with B0s using TOPUP |
| | |
| |
| ===== Useful Guides ===== | ===== Useful Guides ===== |
| * **provided by the Huettel Lab** | * **provided by |
| | the Huettel Lab** |
| * [[huettel:new_lab_members | Guide for new members]]: Some things to get familiar with | * [[huettel:new_lab_members | Guide for new members]]: Some things to get familiar with |
| * [[huettel:guides#guides_to_data_analysis | Guides for data analysis]]: ( FSL Course, Neuro Boot Camp, Eventstats, mricron, python, misc tools, thresholding ) | * [[huettel:guides#guides_to_data_analysis | Guides for data analysis]]: ( FSL Course, Neuro Boot Camp, Eventstats, mricron, python, misc tools, thresholding ) |
