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biac:basics [2012/06/15 14:38]
mm265
biac:basics [2023/02/23 18:43]
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-=== Administrative === 
-  * BIAC accounts: http://wiki.biac.duke.edu/biac:accounts 
-  * password reset: http://wiki.biac.duke.edu/biac:password 
-  * starting your project: http://www.biac.duke.edu/research/gettingstarted.asp 
  
-=== Network === 
- 
-  * Cluster wiki: http://wiki.biac.duke.edu/biac:cluster 
-  * Hugin for dummies 
-                   …or really smart people that just have never worked in this type of system 
-                    
-                   The BIAC cluster, Hugin, is a Linux base processor put in place to analyze any type of data.  You will work on Hugin though a terminal window by writing commands one 
-                   line at a time.  In order to set up access to Hugin on your computer, you need to be behind the firewall.  Being at BIAC or on "Diamonds" or "Clubs" puts you 
-                   behind this firewall. 
-                              
-                             First, you will need X-Win.  On BIAC computers, X-Win comes standard but it can also be downloaded through OIT’s website  
-                             here http://oit.duke.edu/comp-print/software/index.php (select “Browse and order software”). 
-                              
-                             You will also need a cluster account. Please send an email to help@biac.duke.edu requesting a cluster account. 
-                             Include your BIAC Windows username in the email (see http://wiki.biac.duke.edu/biac:accounts). 
-                    
-                    
- 
-On an interactive node 
-Cd findexp 
- 
- 
-Command lines 
-ls 
-ls -ltr 
-mkdir 
-cd 
-.. 
-Tab to complete 
-Gedit . nedit 
- Commenting out 
- saving 
-& 
-bash 
-rm 
-Up arrow 
-cp 
-qdel 
-qstatall 
-Blue “directories” are equivalent to folders, “cd”ing is like double clicking 
-Getting files from munin onto hugin, and mounting experiments?  Findexp 
-Print from terminal window 
- 
- 
- 
-  * Remote desktopping: http://wiki.biac.duke.edu/biac:remotessh 
- 
- 
-=== Data Analysis === 
- 
-  * Submitting jobs: http://wiki.biac.duke.edu/biac:cluster:submit#job_submission 
-  * Packages installed on the cluster: http://wiki.biac.duke.edu/biac:cluster:packages 
-  * Requesting more memory: see "job restrictions" http://wiki.biac.duke.edu/biac:cluster:interactive 
-  * Show Series: http://wiki.biac.duke.edu/biac:matlab:showsrs2 
-  * Trouble shooting flow chart 
-  * Useful tools prezi 
biac/basics.txt · Last modified: 2023/02/23 18:43 (external edit)