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--- biac:cluster:examples [2011/03/31 14:49]
127.0.0.1 external edit
+++ biac:cluster:examples [2023/02/23 18:43]
@@ Line 1: / Line 1: @@
-====== BIAC Cluster Sample Scripts ======
-All of the following scripts can be found on the head node under:
-/usr/local/sge_templates/
-If you are modifying any of the scripts, check for syntax errors before submitting a job.
-  > sh -n script.sh
-===== BXH Tools =====
-  * [[biac:cluster:examples:bxh2analyze|bxh2analyze]] - Create Analyze or NIFTI files from BXH files
-  * [[biac:cluster:examples:qa|qa]] - Run fmri QA analyses on the cluster
-===== FSL =====
-  * [[biac:cluster:examples:bet|BET]] - Brain Extraction Tool
-  * [[biac:cluster:examples:MkFlirtInitMtx|MkFlirtInitMtx]] - Make initialization matrix for use with FLIRT
-  * [[biac:cluster:examples:featlevel1|FEAT Level 1]]
-  * [[biac:cluster:examples:featlevel2|FEAT Level 2]]
-  * [[biac:cluster:examples:fdr|FDR]] - Calculate the false discovery rate (FDR) on 3rd Level/group FSL analysis
-===== Freesurfer =====
-  * [[biac:cluster:examples:runFREE|freesurfer]] - Freesurfer Segmentation

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