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FSL is the fMRI Software Library analysis package developed by the FMRIB laboratory at Oxford University. Useful FMRIB links are:
FSL Overview: Rich Yaxley & O'Dhaniel Mullette-Gillman
Experimental Design: McKell Carter & Amy Winecoff
Advanced Experimental Design: David Smith & John Clithero
Scripting: Chris Petty & Justin Meyer
Step-by-step instructions for using FSL at BIAC can be found at:
A sample FSL analysis; requres access to the Class.01 directory.
by Zoe Englander FSL 2013 Command Line demo