biac:cluster:examples
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Table of Contents
BIAC Cluster Sample Scripts
All of the following scripts can be found on the head node under: /usr/local/sge_templates/
If you are modifying any of the scripts, check for syntax errors before submitting a job.
> sh -n script.sh
BXH Tools
- bxh2analyze - Create Analyze or NIFTI files from BXH files
- qa - Run fmri QA analyses on the cluster
FSL
- BET - Brain Extraction Tool
- MkFlirtInitMtx - Make initialization matrix for use with FLIRT
- FDR - Calculate the false discovery rate (FDR) on 3rd Level/group FSL analysis
Freesurfer
- freesurfer - Freesurfer Segmentation
biac/cluster/examples.1301582952.txt.gz · Last modified: 2024/06/21 15:41 (external edit)