biac:dtiprep
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biac:dtiprep [2014/07/29 19:19] – created voyvodic | biac:dtiprep [2024/06/21 15:44] (current) – external edit 127.0.0.1 | ||
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- | DTIPrep | + | ===== DTIPrep |
- | On HUGIN: | + | Minimal instructions: |
- | * make sure you have gradient tables in a BXH file (e.g. from **dicom2bxh**) | + | |
- | * convert your DTI data to NRRD format (run **bxh2nrrd**) | + | |
- | * run **/ | + | |
- | + | ||
+ | On HUGIN:\\ | ||
+ | * make sure you have gradient tables in a BXH file (e.g. from **dicom2bxh**)\\ | ||
+ | * convert your DTI data to NRRD format (run **bxh2nrrd**)\\ | ||
+ | * run **/ | ||
+ | * click the first icon (OpenNRRD) and then select your NRRD data file\\ | ||
+ | * click the **Protocol** tab\\ | ||
+ | * click the **Default** button (near the tab) to create a protocol\\ | ||
+ | * click **RunByProtocol** (bottom of window) to run the preprocessing\\ | ||
+ | * when it finishes you can use GUI tools to see a report (you are on your own there)\\ | ||
+ | * close the GUI\\ | ||
+ | * you should now see a new ...QCed.NRRD file with your results\\ | ||
+ | * use **nrrd2bxh** to create a BXH header for your new NRRD file\\ | ||
+ | |||
+ | The resultant DTI dataset' | ||
+ | |||
+ | |||
+ | [[biac: | ||
+ | |||
+ | [[http:// | ||
+ | [[https:// |
biac/dtiprep.txt · Last modified: 2024/06/21 15:44 by 127.0.0.1